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1SQK
Asym. Unit
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Asym.Unit (69 KB)
Biol.Unit 1 (65 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CIBOULOT IN COMPLEX WITH SKELETAL ACTIN
Authors
:
M. Hertzog, C. Van Heijenoort, D. Didry, M. Gaudier, B. Gigant, J. Coutant, G. Didelot, T. Preat, M. Knossow, E. Guittet, M. F. Carlier
Date
:
19 Mar 04 (Deposition) - 15 Jun 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Ciboulot; Wh2 Domain; Actin; Actin-Binding Protein, Structural Protein/Protein Binding Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Hertzog, C. Van Heijenoort, D. Didry, M. Gaudier, J. Coutant, B. Gigant, G. Didelot, M. Knossow, E. Guittet, M. F. Carlier
The Beta-Thymosin/Wh2 Domain; Structural Basis For The Switch From Inhibition To Promotion Of Actin Assembly
Cell(Cambridge, Mass. ) V. 117 611 2004
(for further references see the
PDB file header
)
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
2a: LATRUNCULIN A (LARa)
3a: MAGNESIUM ION (MGa)
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No.
Name
Count
Type
Full Name
1
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
LAR
1
Ligand/Ion
LATRUNCULIN A
3
MG
1
Ligand/Ion
MAGNESIUM ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ADP A:377 , HOH A:459 , HOH A:460 , HOH A:462 , HOH A:463 , HOH A:464
BINDING SITE FOR RESIDUE MG A 376
2
AC2
SOFTWARE
GLY A:13 , SER A:14 , GLY A:15 , LEU A:16 , LYS A:18 , GLY A:156 , ASP A:157 , GLY A:182 , ARG A:183 , ARG A:210 , LYS A:213 , GLU A:214 , GLY A:302 , THR A:303 , MG A:376 , LAR A:378 , HOH A:379 , HOH A:387 , HOH A:400 , HOH A:459 , HOH A:460 , HOH A:464
BINDING SITE FOR RESIDUE ADP A 377
3
AC3
SOFTWARE
GLY A:15 , LEU A:16 , PRO A:32 , GLN A:59 , TYR A:69 , ASP A:157 , GLY A:182 , ARG A:183 , THR A:186 , GLU A:207 , ARG A:210 , LYS A:213 , ADP A:377 , HOH A:390
BINDING SITE FOR RESIDUE LAR A 378
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: ACTINS_1 (A:53-63)
2: ACTINS_ACT_LIKE (A:104-116)
3: ACTINS_2 (A:356-364)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ACTINS_1
PS00406
Actins signature 1.
ACTS_RABIT
55-65
1
A:53-63
2
ACTINS_ACT_LIKE
PS01132
Actins and actin-related proteins signature.
ACTS_RABIT
106-118
1
A:104-116
3
ACTINS_2
PS00432
Actins signature 2.
ACTS_RABIT
358-366
1
A:356-364
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d1sqka1 (A:5-146)
1b: SCOP_d1sqka2 (A:147-371)
2a: SCOP_d1sqkb_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
Actin/HSP70
(199)
Protein domain
:
Actin
(69)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(55)
1a
d1sqka1
A:5-146
1b
d1sqka2
A:147-371
Class
:
Peptides
(792)
Fold
:
Actin-binding peptides
(2)
Superfamily
:
Actin-binding peptides
(2)
Family
:
Actin-binding peptides
(2)
Protein domain
:
Ciboulot
(1)
Fruit fly (Drosophila melanogaster) [TaxId: 7227]
(1)
2a
d1sqkb_
B:
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CATH Domains
(3, 4)
Info
all CATH domains
1a: CATH_1sqkA01 (A:6-34,A:71-134,A:337-371)
1b: CATH_1sqkA03 (A:136-181,A:271-332)
2a: CATH_1sqkA04 (A:182-267)
3a: CATH_1sqkA02 (A:35-68)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.40, no name defined]
(217)
Rabbit (Oryctolagus cuniculus)
(44)
1a
1sqkA01
A:6-34,A:71-134,A:337-371
1b
1sqkA03
A:136-181,A:271-332
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Actin; Chain A, domain 4
(156)
Homologous Superfamily
:
Actin; Chain A, domain 4
(155)
Rabbit (Oryctolagus cuniculus)
(44)
2a
1sqkA04
A:182-267
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Actin; Chain A, domain 2
(36)
Homologous Superfamily
:
Actin; Chain A, domain 2
(36)
Rabbit (Oryctolagus cuniculus)
(17)
3a
1sqkA02
A:35-68
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Actin_1sqkA01 (A:5-371)
2a: PFAM_Thymosin_1sqkB01 (B:10-34)
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Clan
:
Actin_ATPase
(173)
Family
:
Actin
(70)
Oryctolagus cuniculus (Rabbit)
(47)
1a
Actin-1sqkA01
A:5-371
Clan
:
no clan defined [family: Thymosin]
(2)
Family
:
Thymosin
(2)
Drosophila melanogaster (Fruit fly)
(1)
2a
Thymosin-1sqkB01
B:10-34
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