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1SQI
Asym. Unit
Info
Asym.Unit (130 KB)
Biol.Unit 1 (124 KB)
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(1)
Title
:
STRUCTURAL BASIS FOR INHIBITOR SELECTIVITY REVEALED BY CRYSTAL STRUCTURES OF PLANT AND MAMMALIAN 4-HYDROXYPHENYLPYRUVATE DIOXYGENASES
Authors
:
C. Yang, J. W. Pflugrath, D. L. Camper, M. L. Foster, D. J. Pernich, T. A. Walsh
Date
:
18 Mar 04 (Deposition) - 17 Aug 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Rat 4-Hydroxyphenylpyruvate Dioxygenase, Biosynthetic Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Yang, J. W. Pflugrath, D. L. Camper, M. L. Foster, D. J. Pernich, T. A. Walsh
Structural Basis For Herbicidal Inhibitor Selectivity Revealed By Comparison Of Crystal Structures Of Plant And Mammalian 4-Hydroxyphenylpyruvate Dioxygenases
Biochemistry V. 43 10414 2004
(for further references see the
PDB file header
)
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: (1-TERT-BUTYL-5-HYDROXY-1H-PYRAZOL... (869a)
1b: (1-TERT-BUTYL-5-HYDROXY-1H-PYRAZOL... (869b)
2a: FE (III) ION (FEa)
2b: FE (III) ION (FEb)
2c: FE (III) ION (FEc)
2d: FE (III) ION (FEd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
869
2
Ligand/Ion
(1-TERT-BUTYL-5-HYDROXY-1H-PYRAZOL-4-YL)[6-(METHYLSULFONYL)-4'-METHOXY-2-METHYL-1,1'-BIPHENYL-3-YL]METHANONE
2
FE
4
Ligand/Ion
FE (III) ION
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:183 , HIS A:266 , GLU A:349 , 869 A:1501 , HOH A:1552
BINDING SITE FOR RESIDUE FE A 1450
2
AC2
SOFTWARE
HIS A:280 , HOH A:1654 , HOH A:1655 , HOH A:1710 , HOH A:1712 , ASP B:315
BINDING SITE FOR RESIDUE FE A 1451
3
AC3
SOFTWARE
HIS B:183 , HIS B:266 , GLU B:349 , 869 B:1502 , HOH B:1531
BINDING SITE FOR RESIDUE FE B 1452
4
AC4
SOFTWARE
ASP A:315 , ARG B:279 , HIS B:280 , HOH B:1541 , HOH B:1648 , HOH B:1659 , HOH B:1660
BINDING SITE FOR RESIDUE FE B 1453
5
AC5
SOFTWARE
HIS A:183 , SER A:226 , PRO A:239 , ASN A:241 , GLN A:251 , HIS A:266 , PHE A:336 , PHE A:347 , GLU A:349 , PHE A:359 , ASN A:363 , PHE A:364 , FE A:1450 , HOH A:1552
BINDING SITE FOR RESIDUE 869 A 1501
6
AC6
SOFTWARE
HIS B:183 , SER B:226 , PRO B:239 , ASN B:241 , GLN B:251 , HIS B:266 , LEU B:289 , PHE B:336 , GLU B:349 , PHE B:359 , ASN B:363 , PHE B:364 , FE B:1452 , HOH B:1531 , HOH B:1737
BINDING SITE FOR RESIDUE 869 B 1502
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: VOC (A:18-149,B:18-149|A:180-338,B:180-...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
VOC
PS51819
Vicinal oxygen chelate (VOC) domain profile.
HPPD_RAT
18-149
180-338
4
A:18-149
B:18-149
A:180-338
B:180-338
[
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Exons
(11, 22)
Info
All Exons
Exon 1.1 (A:8-36 | B:7-36)
Exon 1.2 (A:37-51 | B:37-51)
Exon 1.3 (A:51-78 | B:51-78)
Exon 1.4 (A:79-108 | B:79-108)
Exon 1.5 (A:109-143 | B:109-143)
Exon 1.6 (A:143-169 | B:143-169)
Exon 1.7 (A:169-212 | B:169-210)
Exon 1.8 (A:224-244 | B:224-244)
Exon 1.9 (A:250-288 | B:250-288)
Exon 1.10 (A:289-327 | B:289-327)
Exon 1.11 (A:328-363 | B:328-363)
View:
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All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
11: Boundary 1.10/1.11
12: Boundary 1.11/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000001809
1
ENSRNOE00000012523
chr12:
34548316-34548427
112
HPPD_RAT
1-36
36
2
A:8-36
B:7-36
29
30
1.2
ENSRNOT00000001809
2
ENSRNOE00000012524
chr12:
34548915-34548957
43
HPPD_RAT
37-51
15
2
A:37-51
B:37-51
15
15
1.3
ENSRNOT00000001809
3
ENSRNOE00000012525
chr12:
34549104-34549186
83
HPPD_RAT
51-78
28
2
A:51-78
B:51-78
28
28
1.4
ENSRNOT00000001809
4
ENSRNOE00000012526
chr12:
34550036-34550125
90
HPPD_RAT
79-108
30
2
A:79-108
B:79-108
30
30
1.5
ENSRNOT00000001809
5
ENSRNOE00000012527
chr12:
34552154-34552257
104
HPPD_RAT
109-143
35
2
A:109-143
B:109-143
35
35
1.6
ENSRNOT00000001809
6
ENSRNOE00000012528
chr12:
34552832-34552909
78
HPPD_RAT
143-169
27
2
A:143-169
B:143-169
27
27
1.7
ENSRNOT00000001809
7
ENSRNOE00000012529
chr12:
34554235-34554397
163
HPPD_RAT
169-223
55
2
A:169-212
B:169-210
44
42
1.8
ENSRNOT00000001809
8
ENSRNOE00000012530
chr12:
34554513-34554584
72
HPPD_RAT
224-247
24
2
A:224-244
B:224-244
21
21
1.9
ENSRNOT00000001809
9
ENSRNOE00000012531
chr12:
34556118-34556240
123
HPPD_RAT
248-288
41
2
A:250-288
B:250-288
39
39
1.10
ENSRNOT00000001809
10
ENSRNOE00000012532
chr12:
34557927-34558043
117
HPPD_RAT
289-327
39
2
A:289-327
B:289-327
39
39
1.11
ENSRNOT00000001809
11
ENSRNOE00000012533
chr12:
34558119-34558387
269
HPPD_RAT
328-363
36
2
A:328-363
B:328-363
36
36
[
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]
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1sqia1 (A:8-174)
1b: SCOP_d1sqia2 (A:175-366)
1c: SCOP_d1sqib1 (B:8-174)
1d: SCOP_d1sqib2 (B:175-366)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
(136)
Superfamily
:
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
(136)
Family
:
Extradiol dioxygenases
(43)
Protein domain
:
4-hydroxyphenylpyruvate dioxygenase, HppD
(9)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
1a
d1sqia1
A:8-174
1b
d1sqia2
A:175-366
1c
d1sqib1
B:8-174
1d
d1sqib2
B:175-366
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1sqiA01 (A:8-174)
1b: CATH_1sqiB01 (B:7-174)
1c: CATH_1sqiB02 (B:175-366)
1d: CATH_1sqiA02 (A:175-366)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1
(113)
Homologous Superfamily
:
2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1
(106)
Norway rat (Rattus norvegicus)
(1)
1a
1sqiA01
A:8-174
1b
1sqiB01
B:7-174
1c
1sqiB02
B:175-366
1d
1sqiA02
A:175-366
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Glyoxalase_1sqiB01 (B:180-335)
1b: PFAM_Glyoxalase_1sqiB02 (B:180-335)
1c: PFAM_Glyoxalase_1sqiB03 (B:180-335)
1d: PFAM_Glyoxalase_1sqiB04 (B:180-335)
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Clan
:
Glyoxalase
(58)
Family
:
Glyoxalase
(34)
Rattus norvegicus (Rat)
(1)
1a
Glyoxalase-1sqiB01
B:180-335
1b
Glyoxalase-1sqiB02
B:180-335
1c
Glyoxalase-1sqiB03
B:180-335
1d
Glyoxalase-1sqiB04
B:180-335
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