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1SOX
Asym. Unit
Info
Asym.Unit (174 KB)
Biol.Unit 1 (167 KB)
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(1)
Title
:
SULFITE OXIDASE FROM CHICKEN LIVER
Authors
:
C. Kisker, H. Schindelin, D. C. Rees
Date
:
31 Dec 97 (Deposition) - 29 Apr 98 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Oxidoreductase, Sulfite Oxidation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Kisker, H. Schindelin, A. Pacheco, W. A. Wehbi, R. M. Garrett, K. V. Rajagopalan, J. H. Enemark, D. C. Rees
Molecular Basis Of Sulfite Oxidase Deficiency From The Structure Of Sulfite Oxidase.
Cell(Cambridge, Mass. ) V. 91 973 1997
[
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Hetero Components
(6, 12)
Info
All Hetero Components
1a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
2a: GLYCEROL (GOLa)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
4a: MOLYBDENUM ATOM (MOa)
4b: MOLYBDENUM ATOM (MOb)
5a: PHOSPHONIC ACIDMONO-(2-AMINO-5,6-D... (MTEa)
5b: PHOSPHONIC ACIDMONO-(2-AMINO-5,6-D... (MTEb)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EPE
1
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2
GOL
1
Ligand/Ion
GLYCEROL
3
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
MO
2
Ligand/Ion
MOLYBDENUM ATOM
5
MTE
2
Ligand/Ion
PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER
6
SO4
4
Ligand/Ion
SULFATE ION
[
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]
Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:138 , CYS A:185 , GLY A:187 , ARG A:190 , GLY A:201 , LEU A:202 , TRP A:204 , TYR A:322 , ARG A:450 , HOH A:913 , HOH A:1147
BINDING SITE FOR RESIDUE SO4 A 503
02
AC2
SOFTWARE
HIS A:140 , TRP A:317 , HOH A:984 , HOH A:1132 , HOH A:1181 , HOH A:1206 , ARG B:337 , HOH B:1204 , HOH B:1298
BINDING SITE FOR RESIDUE SO4 A 504
03
AC3
SOFTWARE
ARG B:138 , CYS B:185 , ARG B:190 , GLY B:201 , LEU B:202 , TRP B:204 , TYR B:322 , ARG B:450 , HOH B:912 , HOH B:913
BINDING SITE FOR RESIDUE SO4 B 503
04
AC4
SOFTWARE
ARG A:337 , HIS B:140 , TRP B:317 , HOH B:953 , HOH B:1079 , HOH B:1138 , HOH B:1310
BINDING SITE FOR RESIDUE SO4 B 504
05
AC5
SOFTWARE
PHE A:135 , PHE A:136 , THR A:137 , ARG A:138 , HIS A:140 , CYS A:185 , ASP A:244 , TYR A:252 , HIS A:283 , ARG A:288 , GLY A:296 , ALA A:297 , SER A:299 , VAL A:300 , LYS A:301 , TRP A:302 , TYR A:322 , MO A:505
BINDING SITE FOR RESIDUE MTE A 501
06
AC6
SOFTWARE
CYS A:185 , MTE A:501 , HOH A:913 , HOH A:1329
BINDING SITE FOR RESIDUE MO A 505
07
AC7
SOFTWARE
VAL A:33 , PHE A:36 , HIS A:40 , PRO A:41 , GLY A:42 , LYS A:46 , ILE A:47 , ALA A:50 , PHE A:58 , TRP A:59 , HIS A:65 , HIS A:69 , HOH A:1030 , HOH A:1199
BINDING SITE FOR RESIDUE HEM A 502
08
AC8
SOFTWARE
PHE B:135 , PHE B:136 , THR B:137 , ARG B:138 , HIS B:140 , CYS B:185 , ASP B:244 , TYR B:252 , HIS B:283 , ARG B:288 , GLY B:296 , ALA B:297 , SER B:299 , VAL B:300 , LYS B:301 , TRP B:302 , TYR B:322 , MO B:505
BINDING SITE FOR RESIDUE MTE B 501
09
AC9
SOFTWARE
CYS B:185 , MTE B:501 , HOH B:912 , HOH B:1316
BINDING SITE FOR RESIDUE MO B 505
10
BC1
SOFTWARE
VAL B:33 , PHE B:36 , HIS B:40 , PRO B:41 , LYS B:46 , ILE B:47 , ALA B:50 , LEU B:55 , PHE B:58 , TRP B:59 , TYR B:62 , VAL B:64 , HIS B:65 , HIS B:69 , LEU B:74
BINDING SITE FOR RESIDUE HEM B 502
11
BC2
SOFTWARE
GLY B:161 , LEU B:163 , ARG B:173 , ARG B:197 , PRO B:198 , HIS B:225 , HOH B:1125 , HOH B:1213
BINDING SITE FOR RESIDUE EPE B 911
12
BC3
SOFTWARE
ARG A:337 , THR A:338 , ALA A:339 , PRO A:340 , HOH A:1259 , HOH B:1223
BINDING SITE FOR RESIDUE GOL A 912
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: CYTOCHROME_B5_2 (A:4-83,B:4-83)
2: CYTOCHROME_B5_1 (A:36-43,B:36-43)
3: MOLYBDOPTERIN_EUK (A:157-192,B:157-192)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTOCHROME_B5_2
PS50255
Cytochrome b5 family, heme-binding domain profile.
SUOX_CHICK
4-83
2
A:4-83
B:4-83
2
CYTOCHROME_B5_1
PS00191
Cytochrome b5 family, heme-binding domain signature.
SUOX_CHICK
36-43
2
A:36-43
B:36-43
3
MOLYBDOPTERIN_EUK
PS00559
Eukaryotic molybdopterin oxidoreductases signature.
SUOX_CHICK
157-192
2
A:157-192
B:157-192
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1soxa1 (A:344-466)
1b: SCOP_d1soxb1 (B:344-466)
2a: SCOP_d1soxa2 (A:3-93)
2b: SCOP_d1soxb2 (B:3-93)
3a: SCOP_d1soxa3 (A:94-343)
3b: SCOP_d1soxb3 (B:94-343)
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(
)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
Molybdenum-containing oxidoreductases-like dimerisation domain
(7)
Protein domain
:
Sulfite oxidase, C-terminal domain
(7)
Chicken (Gallus gallus) [TaxId: 9031]
(6)
1a
d1soxa1
A:344-466
1b
d1soxb1
B:344-466
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cytochrome b5-like heme/steroid binding domain
(64)
Superfamily
:
Cytochrome b5-like heme/steroid binding domain
(64)
Family
:
Cytochrome b5
(57)
Protein domain
:
Sulfite oxidase, N-terminal domain
(2)
Chicken (Gallus gallus) [TaxId: 9031]
(1)
2a
d1soxa2
A:3-93
2b
d1soxb2
B:3-93
Fold
:
Oxidoreductase molybdopterin-binding domain
(15)
Superfamily
:
Oxidoreductase molybdopterin-binding domain
(15)
Family
:
Oxidoreductase molybdopterin-binding domain
(9)
Protein domain
:
Sulfite oxidase, middle catalytic domain
(7)
Chicken (Gallus gallus) [TaxId: 9031]
(6)
3a
d1soxa3
A:94-343
3b
d1soxb3
B:94-343
[
close SCOP info
]
CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1soxA02 (A:90-343)
1b: CATH_1soxB02 (B:93-343)
2a: CATH_1soxA01 (A:3-88)
2b: CATH_1soxB01 (B:3-92)
3a: CATH_1soxA03 (A:344-466)
3b: CATH_1soxB03 (B:344-465)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Sulfite Oxidase; Chain A, domain 2
(11)
Homologous Superfamily
:
Sulfite Oxidase; Chain A, domain 2
(11)
Chicken (Gallus gallus)
(6)
1a
1soxA02
A:90-343
1b
1soxB02
B:93-343
Architecture
:
Roll
(3276)
Topology
:
Flavocytochrome B2; Chain A, domain 1
(56)
Homologous Superfamily
:
Flavocytochrome B2, subunit A, domain 1
(56)
Chicken (Gallus gallus)
(1)
2a
1soxA01
A:3-88
2b
1soxB01
B:3-92
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.650, no name defined]
(9)
Chicken (Gallus gallus)
(6)
3a
1soxA03
A:344-466
3b
1soxB03
B:344-465
[
close CATH info
]
Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_Mo_co_dimer_1soxB01 (B:339-459)
1b: PFAM_Mo_co_dimer_1soxB02 (B:339-459)
2a: PFAM_Cyt_b5_1soxB03 (B:6-83)
2b: PFAM_Cyt_b5_1soxB04 (B:6-83)
3a: PFAM_Oxidored_molyb_1soxB05 (B:138-319)
3b: PFAM_Oxidored_molyb_1soxB06 (B:138-319)
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Clans
(
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(
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(
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(
)
Organisms
(
)
(
)
Clan
:
E-set
(290)
Family
:
Mo-co_dimer
(3)
Gallus gallus (Chicken)
(1)
1a
Mo-co_dimer-1soxB01
B:339-459
1b
Mo-co_dimer-1soxB02
B:339-459
Clan
:
no clan defined [family: Cyt-b5]
(29)
Family
:
Cyt-b5
(29)
Gallus gallus (Chicken)
(1)
2a
Cyt-b5-1soxB03
B:6-83
2b
Cyt-b5-1soxB04
B:6-83
Clan
:
no clan defined [family: Oxidored_molyb]
(3)
Family
:
Oxidored_molyb
(3)
Gallus gallus (Chicken)
(1)
3a
Oxidored_molyb-1soxB05
B:138-319
3b
Oxidored_molyb-1soxB06
B:138-319
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Asym.Unit (174 KB)
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