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1SO8
Biol. Unit 2
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Asym.Unit (39 KB)
Biol.Unit 1 (130 KB)
Biol.Unit 2 (258 KB)
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Title
:
ABETA-BOUND HUMAN ABAD STRUCTURE [ALSO KNOWN AS 3-HYDROXYACYL-COA DEHYDROGENASE TYPE II (TYPE II HADH), ENDOPLASMIC RETICULUM-ASSOCIATED AMYLOID BETA-PEPTIDE BINDING PROTEIN (ERAB)]
Authors
:
J. W. Lustbader, M. Cirilli, H. Wu
Date
:
13 Mar 04 (Deposition) - 11 May 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (4x)
Biol. Unit 2: A (8x)
Keywords
:
Alcohol Dehydrogenase; Rossmann Fold; Abeta-Induced Distorsion, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
J. W. Lustbader, M. Cirilli, C. Lin, H. W. Xu, K. Takuma, N. Wang, C. Caspersen, X. Chen, S. Pollak, M. Chaney, F. Trinchese, F. Gunn-Moore, L. F. Lue, D. G. Walker, P. Kuppusamy, Z. L. Zewier, O. Arancio, D. Stern, S. S. Yan, H. Wu
Abad Directly Links Abeta To Mitochondrial Toxicity In Alzheimer'S Disease.
Science V. 304 448 2004
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:67 , GLU A:68 , LYS A:69
BINDING SITE FOR RESIDUE NA A 301
2
AC2
SOFTWARE
GLY A:17 , SER A:20 , HOH A:522 , HOH A:545 , HOH A:560 , HOH A:602
BINDING SITE FOR RESIDUE NA A 302
3
AC3
SOFTWARE
ALA A:154 , SER A:155 , GLY A:173 , ILE A:175 , VAL A:176 , HOH A:570
BINDING SITE FOR RESIDUE CL A 303
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SAPs(SNPs)/Variants
(3, 24)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_015987 (L122V, chain A, )
2: VAR_015988 (R130C, chain A, )
3: VAR_032093 (N247S, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_015987
L
122
V
HCD2_HUMAN
Disease (MHBD deficiency)
28935476
A
L
122
V
2
UniProt
VAR_015988
R
130
C
HCD2_HUMAN
Disease (MHBD deficiency)
28935475
A
R
130
C
3
UniProt
VAR_032093
N
247
S
HCD2_HUMAN
Disease (MHBD deficiency)
---
A
N
247
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: ADH_SHORT (A:155-183)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_SHORT
PS00061
Short-chain dehydrogenases/reductases family signature.
HCD2_HUMAN
155-183
8
A:155-183
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1so8a_ (A:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
Type II 3-hydroxyacyl-CoA dehydrogenase
(6)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1so8a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1so8A00 (A:6-253)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Human (Homo sapiens)
(188)
1a
1so8A00
A:6-253
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_adh_short_1so8A01 (A:11-187)
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Clan
:
NADP_Rossmann
(1239)
Family
:
adh_short
(92)
Homo sapiens (Human)
(21)
1a
adh_short-1so8A01
A:11-187
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Asym.Unit (39 KB)
Header - Asym.Unit
Biol.Unit 1 (130 KB)
Header - Biol.Unit 1
Biol.Unit 2 (258 KB)
Header - Biol.Unit 2
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