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Asym. Unit
Info
Asym.Unit (232 KB)
Biol.Unit 1 (60 KB)
Biol.Unit 2 (60 KB)
Biol.Unit 3 (61 KB)
Biol.Unit 4 (59 KB)
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Title
:
CRYSTAL STRUCTURE OF HUMAN GALACTOSE MUTAROTASE COMPLEXED WITH GALACTOSE
Authors
:
J. B. Thoden, D. J. Timson, R. J. Reece, H. M. Holden
Date
:
12 Mar 04 (Deposition) - 30 Mar 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Mutartoase, Epimerase, Galactosemia, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. B. Thoden, D. J. Timson, R. J. Reece, H. M. Holden
Molecular Structure Of Human Galactose Mutarotase
J. Biol. Chem. V. 279 23431 2004
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: BETA-D-GALACTOSE (GALa)
1b: BETA-D-GALACTOSE (GALb)
1c: BETA-D-GALACTOSE (GALc)
1d: BETA-D-GALACTOSE (GALd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GAL
4
Ligand/Ion
BETA-D-GALACTOSE
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:70 , ASN A:81 , ARG A:82 , LEU A:106 , HIS A:107 , HIS A:176 , TYR A:178 , ASP A:243 , GLN A:279 , GLU A:307 , HOH A:558 , HOH A:616
BINDING SITE FOR RESIDUE GAL A 500
2
AC2
SOFTWARE
PRO B:70 , ASN B:81 , ARG B:82 , LEU B:106 , HIS B:107 , HIS B:176 , TYR B:178 , ASP B:243 , GLN B:279 , GLU B:307 , HOH B:679
BINDING SITE FOR RESIDUE GAL B 600
3
AC3
SOFTWARE
PRO C:70 , ASN C:81 , ARG C:82 , HIS C:107 , HIS C:176 , TYR C:178 , ASP C:243 , GLN C:279 , GLU C:307 , HOH C:761
BINDING SITE FOR RESIDUE GAL C 700
4
AC4
SOFTWARE
PRO D:70 , ASN D:81 , ARG D:82 , LEU D:106 , HIS D:107 , HIS D:176 , TYR D:178 , ASP D:243 , GLN D:279 , TYR D:281 , GLU D:307
BINDING SITE FOR RESIDUE GAL D 800
[
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SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_024451 (N190Y, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_024451
N
190
Y
GALM_HUMAN
Polymorphism
6741892
A/B/C/D
N
190
Y
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ALDOSE_1_EPIMERASE (A:172-181,B:172-181,C:172-181,D:17...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDOSE_1_EPIMERASE
PS00545
Aldose 1-epimerase putative active site.
GALM_HUMAN
172-181
4
A:172-181
B:172-181
C:172-181
D:172-181
[
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Exons
(7, 28)
Info
All Exons
Exon 1.1a (A:1-64 | B:1-64 | C:1-64 | D:1-64)
Exon 1.2 (A:64-115 | B:64-115 | C:64-115 | D...)
Exon 1.4b (A:116-184 | B:116-184 | C:116-184 ...)
Exon 1.5 (A:185-212 | B:185-212 | C:185-212 ...)
Exon 1.7 (A:212-259 | B:212-259 | C:212-259 ...)
Exon 1.8b (A:259-317 | B:259-317 | C:259-317 ...)
Exon 1.9b (A:318-342 | B:318-342 | C:318-342 ...)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.4b
4: Boundary 1.4b/1.5
5: Boundary 1.5/1.7
6: Boundary 1.7/1.8b
7: Boundary 1.8b/1.9b
8: Boundary 1.9b/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000272252
1a
ENSE00001144695
chr2:
38893052-38893493
442
GALM_HUMAN
1-64
64
4
A:1-64
B:1-64
C:1-64
D:1-64
64
64
64
64
1.2
ENST00000272252
2
ENSE00000962504
chr2:
38903054-38903208
155
GALM_HUMAN
64-115
52
4
A:64-115
B:64-115
C:64-115
D:64-115
52
52
52
52
1.4b
ENST00000272252
4b
ENSE00000962505
chr2:
38908422-38908628
207
GALM_HUMAN
116-184
69
4
A:116-184
B:116-184
C:116-184
D:116-184
69
69
69
69
1.5
ENST00000272252
5
ENSE00001072353
chr2:
38916955-38917036
82
GALM_HUMAN
185-212
28
4
A:185-212
B:185-212
C:185-212
D:185-212
28
28
28
28
1.7
ENST00000272252
7
ENSE00001603788
chr2:
38956698-38956839
142
GALM_HUMAN
212-259
48
4
A:212-259
B:212-259
C:212-259
D:212-259
48
48
48
48
1.8b
ENST00000272252
8b
ENSE00001272212
chr2:
38958877-38959051
175
GALM_HUMAN
259-317
59
4
A:259-317
B:259-317
C:259-317
D:259-317
59
59
59
59
1.9b
ENST00000272252
9b
ENSE00001361889
chr2:
38960630-38961910
1281
GALM_HUMAN
318-342
25
4
A:318-342
B:318-342
C:318-342
D:318-342
25
25
25
25
[
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]
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1so0a_ (A:)
1b: SCOP_d1so0b_ (B:)
1c: SCOP_d1so0c_ (C:)
1d: SCOP_d1so0d_ (D:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Supersandwich
(271)
Superfamily
:
Galactose mutarotase-like
(205)
Family
:
Aldose 1-epimerase (mutarotase)
(23)
Protein domain
:
Galactose mutarotase
(22)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1so0a_
A:
1b
d1so0b_
B:
1c
d1so0c_
C:
1d
d1so0d_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1so0B00 (B:1-342)
1b: CATH_1so0D00 (D:1-342)
1c: CATH_1so0A00 (A:-1-342)
1d: CATH_1so0C00 (C:-1-342)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Beta-galactosidase; Chain A, domain 5
(250)
Homologous Superfamily
:
[code=2.70.98.10, no name defined]
(116)
Human (Homo sapiens)
(2)
1a
1so0B00
B:1-342
1b
1so0D00
D:1-342
1c
1so0A00
A:-1-342
1d
1so0C00
C:-1-342
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Aldose_epim_1so0D01 (D:20-338)
1b: PFAM_Aldose_epim_1so0D02 (D:20-338)
1c: PFAM_Aldose_epim_1so0D03 (D:20-338)
1d: PFAM_Aldose_epim_1so0D04 (D:20-338)
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(
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Clan
:
Gal_mutarotase
(81)
Family
:
Aldose_epim
(24)
Homo sapiens (Human)
(2)
1a
Aldose_epim-1so0D01
D:20-338
1b
Aldose_epim-1so0D02
D:20-338
1c
Aldose_epim-1so0D03
D:20-338
1d
Aldose_epim-1so0D04
D:20-338
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Asym.Unit (232 KB)
Header - Asym.Unit
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Biol.Unit 2 (60 KB)
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Biol.Unit 3 (61 KB)
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