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1SNR
Asym. Unit
Info
Asym.Unit (358 KB)
Biol.Unit 1 (352 KB)
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(1)
Title
:
NITRIC OXIDE BOUND TO CU NITRITE REDUCTASE
Authors
:
E. I. Tocheva, F. I. Rosell, A. G. Mauk, M. E. Murphy
Date
:
11 Mar 04 (Deposition) - 22 Jun 04 (Release) - 30 Apr 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.31
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Nitric Oxide, Nitrite Reductase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. I. Tocheva, F. I. Rosell, A. G. Mauk, M. E. Murphy
Side-On Copper-Nitrosyl Coordination By Nitrite Reductase.
Science V. 304 867 2004
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Hetero Components
(5, 18)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
2a: COPPER (I) ION (CU1a)
2b: COPPER (I) ION (CU1b)
2c: COPPER (I) ION (CU1c)
3a: COPPER (II) ION (CUa)
3b: COPPER (II) ION (CUb)
3c: COPPER (II) ION (CUc)
4a: NITRIC OXIDE (NOa)
4b: NITRIC OXIDE (NOb)
4c: NITRIC OXIDE (NOc)
5a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
8
Ligand/Ion
ACETATE ION
3
CU
3
Ligand/Ion
COPPER (II) ION
2
CU1
3
Ligand/Ion
COPPER (I) ION
4
NO
3
Ligand/Ion
NITRIC OXIDE
5
TRS
1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
[
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:95 , CYS A:136 , HIS A:145 , MET A:150
BINDING SITE FOR RESIDUE CU1 A 501
02
AC2
SOFTWARE
ASP A:98 , HIS A:100 , HIS A:135 , NO A:503 , HIS B:306
BINDING SITE FOR RESIDUE CU A 502
03
AC3
SOFTWARE
HIS B:95 , CYS B:136 , HIS B:145 , MET B:150
BINDING SITE FOR RESIDUE CU1 B 501
04
AC4
SOFTWARE
ASP B:98 , HIS B:100 , HIS B:135 , NO B:503 , HIS C:306
BINDING SITE FOR RESIDUE CU B 502
05
AC5
SOFTWARE
HIS C:95 , CYS C:136 , HIS C:145 , MET C:150
BINDING SITE FOR RESIDUE CU1 C 501
06
AC6
SOFTWARE
HIS A:306 , HIS C:100 , HIS C:135 , NO C:503
BINDING SITE FOR RESIDUE CU C 502
07
AC7
SOFTWARE
GLY B:229 , HIS B:319
BINDING SITE FOR RESIDUE ACT B 1503
08
AC8
SOFTWARE
HOH A:1545 , ASP B:173 , GLY B:238 , GLU B:239 , LYS B:240 , HOH B:1586
BINDING SITE FOR RESIDUE ACT B 1504
09
AC9
SOFTWARE
GLY B:140 , MET B:141 , VAL B:142 , PRO B:143 , TRP B:144 , GLU C:313
BINDING SITE FOR RESIDUE ACT B 1505
10
BC1
SOFTWARE
HOH B:1515 , HOH B:1677 , HOH B:1680
BINDING SITE FOR RESIDUE ACT B 1506
11
BC2
SOFTWARE
VAL C:59 , HIS C:60 , TYR C:184 , PRO C:186 , THR C:206 , HOH C:1536 , HOH C:1622
BINDING SITE FOR RESIDUE ACT C 1507
12
BC3
SOFTWARE
GLU A:313 , GLY C:140 , MET C:141 , VAL C:142 , PRO C:143 , TRP C:144 , MET C:210
BINDING SITE FOR RESIDUE ACT C 1508
13
BC4
SOFTWARE
GLY C:229 , HIS C:319 , LYS C:321
BINDING SITE FOR RESIDUE ACT C 1509
14
BC5
SOFTWARE
GLY A:140 , MET A:141 , VAL A:142 , PRO A:143 , TRP A:144 , TYR A:203 , VAL A:207 , GLU B:313 , GLU B:325
BINDING SITE FOR RESIDUE ACT A 1510
15
BC6
SOFTWARE
ASP A:98 , HIS A:100 , HIS A:135 , CU A:502 , HIS B:255 , ILE B:257 , HIS B:306
BINDING SITE FOR RESIDUE NO A 503
16
BC7
SOFTWARE
ASP B:98 , HIS B:100 , HIS B:135 , CU B:502 , HIS C:255 , ILE C:257 , HIS C:306
BINDING SITE FOR RESIDUE NO B 503
17
BC8
SOFTWARE
HIS A:255 , ILE A:257 , HIS A:306 , ASP C:98 , HIS C:100 , HIS C:135 , CU C:502
BINDING SITE FOR RESIDUE NO C 503
18
BC9
SOFTWARE
THR A:212 , LEU A:213 , THR A:214 , HOH A:1666 , HOH A:1705 , HOH A:1712 , THR B:212 , LEU B:213 , THR B:214 , THR C:212 , LEU C:213 , THR C:214
BINDING SITE FOR RESIDUE TRS A 1501
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1snra1 (A:5-166)
1b: SCOP_d1snra2 (A:167-339)
1c: SCOP_d1snrb1 (B:5-166)
1d: SCOP_d1snrb2 (B:167-339)
1e: SCOP_d1snrc1 (C:5-166)
1f: SCOP_d1snrc2 (C:167-339)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Multidomain cupredoxins
(146)
Protein domain
:
Nitrite reductase, NIR
(79)
Alcaligenes faecalis, strain s-6 [TaxId: 511]
(31)
1a
d1snra1
A:5-166
1b
d1snra2
A:167-339
1c
d1snrb1
B:5-166
1d
d1snrb2
B:167-339
1e
d1snrc1
C:5-166
1f
d1snrc2
C:167-339
[
close SCOP info
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1snrA01 (A:11-158)
1b: CATH_1snrB01 (B:11-158)
1c: CATH_1snrC01 (C:11-158)
1d: CATH_1snrA02 (A:159-325)
1e: CATH_1snrB02 (B:159-325)
1f: CATH_1snrC02 (C:159-325)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
Alcaligenes faecalis. Organism_taxid: 511.
(13)
1a
1snrA01
A:11-158
1b
1snrB01
B:11-158
1c
1snrC01
C:11-158
1d
1snrA02
A:159-325
1e
1snrB02
B:159-325
1f
1snrC02
C:159-325
[
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_Cu_oxidase_1snrC01 (C:174-326)
1b: PFAM_Cu_oxidase_1snrC02 (C:174-326)
1c: PFAM_Cu_oxidase_1snrC03 (C:174-326)
2a: PFAM_Cu_oxidase_3_1snrC04 (C:44-161)
2b: PFAM_Cu_oxidase_3_1snrC05 (C:44-161)
2c: PFAM_Cu_oxidase_3_1snrC06 (C:44-161)
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Clans
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)
(
)
Clan
:
CU_oxidase
(192)
Family
:
Cu-oxidase
(74)
Alcaligenes faecalis
(18)
1a
Cu-oxidase-1snrC01
C:174-326
1b
Cu-oxidase-1snrC02
C:174-326
1c
Cu-oxidase-1snrC03
C:174-326
Family
:
Cu-oxidase_3
(79)
Alcaligenes faecalis
(18)
2a
Cu-oxidase_3-1snrC04
C:44-161
2b
Cu-oxidase_3-1snrC05
C:44-161
2c
Cu-oxidase_3-1snrC06
C:44-161
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