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1SM4
Asym. Unit
Info
Asym.Unit (110 KB)
Biol.Unit 1 (54 KB)
Biol.Unit 2 (54 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF THE FERREDOXIN-NADP+ REDUCTASE FROM PAPRIKA
Authors
:
A. Dorowski, A. Hofmann, C. Steegborn, M. Boicu, R. Huber
Date
:
08 Mar 04 (Deposition) - 16 Mar 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Oxidoreductase, Rossmann Fold
(Keyword Search:
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Reference
:
A. Dorowski, A. Hofmann, C. Steegborn, M. Boicu, R. Huber
Crystal Structure Of Paprika Ferredoxin-Nadp+ Reductase. Implications For The Electron Transfer Pathway.
J. Biol. Chem. V. 276 9253 2001
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
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No.
Name
Count
Type
Full Name
1
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
PO4
2
Ligand/Ion
PHOSPHATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:282 , ARG A:283 , LYS A:292 , TYR A:294
BINDING SITE FOR RESIDUE PO4 A 363
2
AC2
SOFTWARE
GLY B:1074 , SER B:1282 , ARG B:1283 , LYS B:1292 , TYR B:1294
BINDING SITE FOR RESIDUE PO4 B 1363
3
AC3
SOFTWARE
ARG A:141 , LEU A:142 , TYR A:143 , SER A:144 , CYS A:162 , VAL A:163 , LYS A:164 , LEU A:166 , TYR A:168 , ASN A:170 , GLY A:178 , VAL A:179 , CYS A:180 , SER A:181 , THR A:220 , GLU A:360 , TYR A:362 , HOH A:374 , HOH A:432 , HOH A:506 , HOH A:513 , HOH A:566
BINDING SITE FOR RESIDUE FAD A 364
4
AC4
SOFTWARE
SER B:1123 , ARG B:1141 , LEU B:1142 , TYR B:1143 , SER B:1144 , CYS B:1162 , VAL B:1163 , LYS B:1164 , TYR B:1168 , ASN B:1170 , GLY B:1178 , VAL B:1179 , CYS B:1180 , SER B:1181 , THR B:1220 , GLU B:1360 , TYR B:1362 , HOH B:1378 , HOH B:1380 , HOH B:1381 , HOH B:1430 , HOH B:1442
BINDING SITE FOR RESIDUE FAD B 1364
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1sm4a1 (A:67-207)
1b: SCOP_d1sm4b1 (B:1067-1207)
2a: SCOP_d1sm4a2 (A:208-362)
2b: SCOP_d1sm4b2 (B:1208-1362)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Riboflavin synthase domain-like
(130)
Family
:
Ferredoxin reductase FAD-binding domain-like
(72)
Protein domain
:
Ferredoxin reductase (flavodoxin reductase) N-terminal domain
(38)
Paprika (Capsicum annuum) [TaxId: 4072]
(1)
1a
d1sm4a1
A:67-207
1b
d1sm4b1
B:1067-1207
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ferredoxin reductase-like, C-terminal NADP-linked domain
(120)
Superfamily
:
Ferredoxin reductase-like, C-terminal NADP-linked domain
(120)
Family
:
Reductases
(68)
Protein domain
:
Ferredoxin reductase (flavodoxin reductase)
(38)
Paprika (Capsicum annuum) [TaxId: 4072]
(1)
2a
d1sm4a2
A:208-362
2b
d1sm4b2
B:1208-1362
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1sm4A02 (A:200-362)
1b: CATH_1sm4B02 (B:1200-1362)
2a: CATH_1sm4A01 (A:67-199)
2b: CATH_1sm4B01 (B:1067-1199)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module
(85)
Capsicum annuum. Organism_taxid: 4072.
(1)
1a
1sm4A02
A:200-362
1b
1sm4B02
B:1200-1362
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Elongation Factor Tu (Ef-tu); domain 3
(323)
Homologous Superfamily
:
Translation factors
(223)
Capsicum annuum. Organism_taxid: 4072.
(1)
2a
1sm4A01
A:67-199
2b
1sm4B01
B:1067-1199
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_FAD_binding_6_1sm4B01 (B:1107-1204)
1b: PFAM_FAD_binding_6_1sm4B02 (B:1107-1204)
2a: PFAM_NAD_binding_1_1sm4B03 (B:1215-1331)
2b: PFAM_NAD_binding_1_1sm4B04 (B:1215-1331)
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Clan
:
FAD_Lum_binding
(30)
Family
:
FAD_binding_6
(24)
Capsicum annuum (Bell pepper)
(1)
1a
FAD_binding_6-1sm4B01
B:1107-1204
1b
FAD_binding_6-1sm4B02
B:1107-1204
Clan
:
NAD_Ferredoxin
(30)
Family
:
NAD_binding_1
(30)
Capsicum annuum (Bell pepper)
(1)
2a
NAD_binding_1-1sm4B03
B:1215-1331
2b
NAD_binding_1-1sm4B04
B:1215-1331
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Asym.Unit (110 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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