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1SLM
Biol. Unit 1
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Asym.Unit (56 KB)
Biol.Unit 1 (101 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FIBROBLAST STROMELYSIN-1: THE C-TRUNCATED HUMAN PROENZYME
Authors
:
J. W. Becker
Date
:
03 Aug 95 (Deposition) - 17 Dec 96 (Release) - 29 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Hydrolase, Metalloprotease, Fibroblast, Collagen Degradation
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. W. Becker, A. I. Marcy, L. L. Rokosz, M. G. Axel, J. J. Burbaum, P. M. Fitzgerald, P. M. Cameron, C. K. Esser, W. K. Hagmann, J. D. Hermes J. P. Springer
Stromelysin-1: Three-Dimensional Structure Of The Inhibited Catalytic Domain And Of The C-Truncated Proenzyme.
Protein Sci. V. 4 1966 1995
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: CA1 (UNKNOWN)
6: CA2 (UNKNOWN)
7: ZN1 (UNKNOWN)
8: ZN2 (UNKNOWN)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:75 , HIS A:201 , HIS A:205 , HIS A:211
BINDING SITE FOR RESIDUE ZN A 257
2
AC2
SOFTWARE
HIS A:151 , ASP A:153 , HIS A:166 , TYR A:168 , HIS A:179
BINDING SITE FOR RESIDUE ZN A 258
3
AC3
SOFTWARE
ASP A:158 , GLY A:159 , GLY A:161 , VAL A:163 , ASP A:181 , GLU A:184
BINDING SITE FOR RESIDUE CA A 259
4
AC4
SOFTWARE
ASP A:141 , GLY A:173 , ASN A:175 , ASP A:177 , HOH A:306 , HOH A:312
BINDING SITE FOR RESIDUE CA A 260
5
CA1
UNKNOWN
ASP A:158 , GLY A:159 , GLY A:161 , VAL A:163 , ASP A:181 , GLU A:184
CA1 ARE THE LIGANDS OF THE CALCIUM ION CA 259
6
CA2
UNKNOWN
ASP A:141 , GLY A:173 , ASN A:175 , ASP A:177 , HOH A:306 , HOH A:312
CA2 ARE THE LIGANDS OF THE CALCIUM ION CA 260
7
ZN1
UNKNOWN
CYS A:75 , HIS A:201 , HIS A:205 , HIS A:211
ZN1 ARE THE LIGANDS OF THE CATALYTIC (ZN 257) ZINC ION.
8
ZN2
UNKNOWN
HIS A:151 , ASP A:153 , HIS A:166 , HIS A:179
ZN2 ARE THE LIGANDS OF THE STRUCTURAL (ZN 258) ZINC ION.
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_013090 (K28E, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_013090
K
45
E
MMP3_HUMAN
Polymorphism
679620
A
K
28
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: CYSTEINE_SWITCH (A:73-80)
2: ZINC_PROTEASE (A:198-207)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYSTEINE_SWITCH
PS00546
Matrixins cysteine switch.
MMP3_HUMAN
90-97
2
A:73-80
2
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
MMP3_HUMAN
215-224
2
A:198-207
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1slma1 (A:16-80)
2a: SCOP_d1slma2 (A:81-250)
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Protein Domains
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)
(
)
Organisms
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)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
PGBD-like
(9)
Superfamily
:
PGBD-like
(9)
Family
:
MMP N-terminal domain
(6)
Protein domain
:
Stromelysin-1 (MMP-3)
(1)
Human (Homo sapiens), fibroblast [TaxId: 9606]
(1)
1a
d1slma1
A:16-80
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Matrix metalloproteases, catalytic domain
(199)
Protein domain
:
Stromelysin-1 (MMP-3)
(40)
Human (Homo sapiens), fibroblast [TaxId: 9606]
(40)
2a
d1slma2
A:81-250
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1slmA00 (A:16-250)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Collagenase (Catalytic Domain)
(236)
Homologous Superfamily
:
Collagenase (Catalytic Domain)
(234)
Human (Homo sapiens)
(153)
1a
1slmA00
A:16-250
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_PG_binding_1_1slmA01 (A:16-70)
2a: PFAM_Peptidase_M10_1slmA02 (A:91-247)
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Clans
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Clan
:
PGBD
(5)
Family
:
PG_binding_1
(4)
Homo sapiens (Human)
(3)
1a
PG_binding_1-1slmA01
A:16-70
Clan
:
Peptidase_MA
(251)
Family
:
Peptidase_M10
(85)
Homo sapiens (Human)
(82)
2a
Peptidase_M10-1slmA02
A:91-247
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