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1SLB
Asym. Unit
Info
Asym.Unit (102 KB)
Biol.Unit 1 (51 KB)
Biol.Unit 2 (49 KB)
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(1)
Title
:
X-RAY CRYSTALLOGRAPHY REVEALS CROSSLINKING OF MAMMALIAN LECTIN (GALECTIN-1) BY BIANTENNARY COMPLEX TYPE SACCHARIDES
Authors
:
Y. Bourne, C. Cambillau
Date
:
12 Mar 94 (Deposition) - 26 Jan 95 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Complex(Lectin-Saccharide), Complex(Lectin-Saccharide) Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Bourne, B. Bolgiano, D. I. Liao, G. Strecker, P. Cantau, O. Herzberg T. Feizi, C. Cambillau
Crosslinking Of Mammalian Lectin (Galectin-1) By Complex Biantennary Saccharides.
Nat. Struct. Biol. V. 1 863 1994
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 15)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: BETA-D-GALACTOSE (GALa)
2b: BETA-D-GALACTOSE (GALb)
2c: BETA-D-GALACTOSE (GALc)
2d: BETA-D-GALACTOSE (GALd)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
GAL
4
Ligand/Ion
BETA-D-GALACTOSE
3
MAN
5
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
5
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: G1C (UNKNOWN)
17: GA1 (UNKNOWN)
18: GA2 (UNKNOWN)
19: GC2 (UNKNOWN)
20: MN1 (UNKNOWN)
21: MN2 (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:48 , GLU A:71 , ARG A:73 , GAL A:352 , MAN A:353 , NAG A:355 , GLY B:66
BINDING SITE FOR RESIDUE NAG A 351
02
AC2
SOFTWARE
HIS A:44 , ASN A:46 , ARG A:48 , HIS A:52 , ASN A:61 , GLU A:71 , NAG A:351 , HOH A:780 , HOH A:818 , HOH A:841 , ASN B:39
BINDING SITE FOR RESIDUE GAL A 352
03
AC3
SOFTWARE
NAG A:351 , BMA A:354 , NAG A:355 , HOH A:877 , HOH B:149 , NAG C:361
BINDING SITE FOR RESIDUE MAN A 353
04
AC4
SOFTWARE
MAN A:353 , NAG A:355 , MAN A:763 , HOH A:877 , HIS D:52 , GLY D:53 , HOH D:197
BINDING SITE FOR RESIDUE BMA A 354
05
AC5
SOFTWARE
GLY A:53 , ARG A:73 , NAG A:351 , MAN A:353 , BMA A:354 , HOH A:877 , HOH A:882
BINDING SITE FOR RESIDUE NAG A 355
06
AC6
SOFTWARE
BMA A:354 , NAG A:761 , HOH B:164
BINDING SITE FOR RESIDUE MAN A 763
07
AC7
SOFTWARE
GAL A:762 , MAN A:763 , HOH A:860 , GLY B:69 , ARG D:48 , GLU D:71 , ARG D:73 , HOH D:200
BINDING SITE FOR RESIDUE NAG A 761
08
AC8
SOFTWARE
NAG A:761 , HOH B:150 , HOH B:165 , HIS D:44 , ASN D:46 , ARG D:48 , HIS D:52 , ASN D:61 , GLU D:71 , HOH D:144 , HOH D:199
BINDING SITE FOR RESIDUE GAL A 762
09
AC9
SOFTWARE
MAN A:353 , ARG B:48 , GLU B:71 , ARG B:73 , GAL C:362 , MAN C:363
BINDING SITE FOR RESIDUE NAG C 361
10
BC1
SOFTWARE
HIS B:44 , ASN B:46 , ARG B:48 , HIS B:52 , VAL B:59 , ASN B:61 , TRP B:68 , GLU B:71 , HOH B:145 , HOH B:160 , NAG C:361
BINDING SITE FOR RESIDUE GAL C 362
11
BC2
SOFTWARE
NAG C:361 , MAN C:364 , HOH D:161 , HOH D:163
BINDING SITE FOR RESIDUE MAN C 363
12
BC3
SOFTWARE
MAN C:363 , MAN C:753 , HOH C:842
BINDING SITE FOR RESIDUE MAN C 364
13
BC4
SOFTWARE
MAN C:364 , NAG C:751 , HOH C:809 , HOH D:170 , HOH D:175
BINDING SITE FOR RESIDUE MAN C 753
14
BC5
SOFTWARE
ARG C:48 , GLU C:71 , ARG C:73 , GAL C:752 , MAN C:753
BINDING SITE FOR RESIDUE NAG C 751
15
BC6
SOFTWARE
HIS C:44 , ASN C:46 , ARG C:48 , HIS C:52 , ASN C:61 , GLU C:71 , NAG C:751 , HOH C:765 , HOH C:767
BINDING SITE FOR RESIDUE GAL C 752
16
G1C
UNKNOWN
ARG A:48 , GLU A:71 , ARG A:73 , ARG C:48 , GLU C:71 , ARG C:73
NULL
17
GA1
UNKNOWN
HIS A:44 , ASN A:46 , ARG A:48 , TRP A:68 , ASN A:61 , GLU A:71 , HIS C:44 , ASN C:46 , ARG C:48 , TRP C:68 , ASN C:61 , GLU C:71
NULL
18
GA2
UNKNOWN
HIS B:44 , ASN B:46 , ARG B:48 , TRP B:68 , ASN B:61 , GLU B:71 , HIS D:44 , ASN D:46 , ARG D:48 , TRP D:68 , ASN D:61 , GLU D:71
NULL
19
GC2
UNKNOWN
ARG B:48 , GLU B:71 , ARG B:73 , ARG D:48 , GLU D:71 , ARG D:73
NULL
20
MN1
UNKNOWN
GLY A:53 , GLY C:53
NULL
21
MN2
UNKNOWN
GLY B:53 , GLY D:53
NULL
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: GALECTIN (A:3-134,B:3-134,C:3-134,D:3-134)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GALECTIN
PS51304
Galactoside-binding lectin (galectin) domain profile.
LEG1_BOVIN
4-135
4
A:3-134
B:3-134
C:3-134
D:3-134
[
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Exons
(2, 8)
Info
All Exons
Exon 1.1 (A:1-57 | B:1-57 | C:1-57 | D:1-57)
Exon 1.2 (A:58-105 | B:58-105 | C:58-105 | D...)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000020080
1
ENSBTAE00000163579
chr5:
116534343-116535003
661
LEG1_BOVIN
1-58
58
4
A:1-57
B:1-57
C:1-57
D:1-57
57
57
57
57
1.2
ENSBTAT00000020080
2
ENSBTAE00000163587
chr5:
116535341-116535537
197
LEG1_BOVIN
59-106
48
4
A:58-105
B:58-105
C:58-105
D:58-105
48
48
48
48
[
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]
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1slba_ (A:)
1b: SCOP_d1slbb_ (B:)
1c: SCOP_d1slbc_ (C:)
1d: SCOP_d1slbd_ (D:)
View:
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)
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(
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Galectin (animal S-lectin)
(75)
Protein domain
:
Galectin-1
(22)
Cow (Bos taurus) [TaxId: 9913]
(4)
1a
d1slba_
A:
1b
d1slbb_
B:
1c
d1slbc_
C:
1d
d1slbd_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1slbA00 (A:1-134)
1b: CATH_1slbB00 (B:1-134)
1c: CATH_1slbC00 (C:1-134)
1d: CATH_1slbD00 (D:1-134)
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.200, no name defined]
(421)
Cow (Bos taurus)
(4)
1a
1slbA00
A:1-134
1b
1slbB00
B:1-134
1c
1slbC00
C:1-134
1d
1slbD00
D:1-134
[
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]
Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Gal_bind_lectin_1slbD01 (D:3-133)
1b: PFAM_Gal_bind_lectin_1slbD02 (D:3-133)
1c: PFAM_Gal_bind_lectin_1slbD03 (D:3-133)
1d: PFAM_Gal_bind_lectin_1slbD04 (D:3-133)
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Organisms
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)
Clan
:
Concanavalin
(293)
Family
:
Gal-bind_lectin
(60)
Bos taurus (Bovine)
(3)
1a
Gal-bind_lectin-1slbD01
D:3-133
1b
Gal-bind_lectin-1slbD02
D:3-133
1c
Gal-bind_lectin-1slbD03
D:3-133
1d
Gal-bind_lectin-1slbD04
D:3-133
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