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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Exon' information from database.
1SL5
Asym. Unit
Info
Asym.Unit (33 KB)
Biol.Unit 1 (29 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DC-SIGN CARBOHYDRATE RECOGNITION DOMAIN COMPLEXED WITH LNFP III (DEXTRA L504).
Authors
:
Y. Guo, H. Feinberg, E. Conroy, D. A. Mitchell, R. Alvarez, O. Blixt, M. E W. I. Weis, K. Drickamer
Date
:
05 Mar 04 (Deposition) - 15 Jun 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Dc-Sign, C-Type Lectin, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Guo, H. Feinberg, E. Conroy, D. A. Mitchell, R. Alvarez, O. Blixt, M. E. Taylor, W. I. Weis, K. Drickamer
Structural Basis For Distinct Ligand-Binding And Targeting Properties Of The Receptors Dc-Sign And Dc-Signr
Nat. Struct. Mol. Biol. V. 11 591 2004
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Hetero Components
(5, 7)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: ALPHA-L-FUCOSE (FUCa)
3a: BETA-D-GALACTOSE (GALa)
3b: BETA-D-GALACTOSE (GALb)
4a: MAGNESIUM ION (MGa)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
3
GAL
2
Ligand/Ion
BETA-D-GALACTOSE
4
MG
1
Ligand/Ion
MAGNESIUM ION
5
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
NAG A:2 , FUC A:3 , THR A:282 , GLU A:286 , PHE A:313 , ASP A:367 , LEU A:371 , HOH A:426 , HOH A:437 , HOH A:439 , HOH A:444 , HOH A:450 , HOH A:462 , HOH A:464
BINDING SITE FOR RESIDUE GAL A 1
2
AC2
SOFTWARE
GAL A:1 , FUC A:3 , GAL A:4 , GLN A:341 , GLU A:353 , HOH A:431 , HOH A:513 , HOH A:518 , HOH A:549
BINDING SITE FOR RESIDUE NAG A 2
3
AC3
SOFTWARE
GAL A:1 , NAG A:2 , GLU A:347 , ASN A:349 , VAL A:351 , GLU A:354 , ASN A:365 , ASP A:366 , CA A:402 , HOH A:447
BINDING SITE FOR RESIDUE FUC A 3
4
AC4
SOFTWARE
NAG A:2 , GLU A:286 , VAL A:287 , GLY A:288 , HOH A:448 , HOH A:513 , HOH A:570
BINDING SITE FOR RESIDUE GAL A 4
5
AC5
SOFTWARE
ASP A:320 , GLU A:324 , ASN A:350 , GLU A:354 , ASP A:355 , HOH A:407
BINDING SITE FOR RESIDUE CA A 401
6
AC6
SOFTWARE
FUC A:3 , GLU A:347 , ASN A:349 , GLU A:354 , ASN A:365 , ASP A:366
BINDING SITE FOR RESIDUE CA A 402
7
AC7
SOFTWARE
ASP A:355 , HOH A:404 , HOH A:405 , HOH A:406 , HOH A:409 , HOH A:410
BINDING SITE FOR RESIDUE MG A 403
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_050105 (A382S, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_050105
A
382
S
CD209_HUMAN
Polymorphism
11465393
A
A
382
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: C_TYPE_LECTIN_2 (A:263-378)
2: C_TYPE_LECTIN_1 (A:356-377)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C_TYPE_LECTIN_2
PS50041
C-type lectin domain profile.
CD209_HUMAN
263-378
1
A:263-378
2
C_TYPE_LECTIN_1
PS00615
C-type lectin domain signature.
CD209_HUMAN
356-377
1
A:356-377
[
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Exons
(3, 3)
Info
All Exons
Exon 1.5 (A:253-300)
Exon 1.6a (A:301-338)
Exon 1.7 (A:338-383)
View:
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All Exon Boundaries
1: Boundary 1.4c/1.5
2: Boundary 1.5/1.6a
3: Boundary 1.6a/1.7
4: Boundary 1.7/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000315599
1
ENSE00001352512
chr19:
7812464-7812352
113
CD209_HUMAN
1-16
16
0
-
-
1.2c
ENST00000315599
2c
ENSE00001202067
chr19:
7812251-7812192
60
CD209_HUMAN
16-36
21
0
-
-
1.3
ENST00000315599
3
ENSE00000671477
chr19:
7811417-7811346
72
CD209_HUMAN
36-60
25
0
-
-
1.4c
ENST00000315599
4c
ENSE00001724938
chr19:
7810973-7810404
570
CD209_HUMAN
60-250
191
0
-
-
1.5
ENST00000315599
5
ENSE00001689133
chr19:
7809978-7809827
152
CD209_HUMAN
250-300
51
1
A:253-300
48
1.6a
ENST00000315599
6a
ENSE00001747548
chr19:
7809105-7808993
113
CD209_HUMAN
301-338
38
1
A:301-338
38
1.7
ENST00000315599
7
ENSE00001352516
chr19:
7808126-7804879
3248
CD209_HUMAN
338-404
67
1
A:338-383
46
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1sl5a_ (A:)
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Classes
(
)
(
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Folds
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(
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(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
C-type lectin-like
(322)
Superfamily
:
C-type lectin-like
(322)
Family
:
C-type lectin domain
(182)
Protein domain
:
DC-SIGN (dendritic cell-specific ICAM-3 grabbing nonintegrin)
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d1sl5a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1sl5A00 (A:253-383)
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)
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)
Topologies
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Mannose-Binding Protein A; Chain A
(180)
Homologous Superfamily
:
Mannose-Binding Protein A, subunit A
(180)
Human (Homo sapiens)
(80)
1a
1sl5A00
A:253-383
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Lectin_C_1sl5A01 (A:273-379)
View:
Select:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
C_Lectin
(98)
Family
:
Lectin_C
(85)
Homo sapiens (Human)
(39)
1a
Lectin_C-1sl5A01
A:273-379
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Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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Asym.Unit (33 KB)
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