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1SJA
Asym. Unit
Info
Asym.Unit (243 KB)
Biol.Unit 1 (466 KB)
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(1)
Title
:
X-RAY STRUCTURE OF O-SUCCINYLBENZOATE SYNTHASE COMPLEXED WITH N-ACETYLMETHIONINE
Authors
:
J. B. Thoden, E. A. Taylor-Ringia, J. B. Garrett, J. A. Gerlt, H. M. Holden, I. Rayment
Date
:
03 Mar 04 (Deposition) - 01 Jun 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (2x)
Keywords
:
Racemase, Lyase, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. B. Thoden, E. A. Taylor-Ringia, J. B. Garrett, J. A. Gerlt, H. M. Holden, I. Rayment
Evolution Of Enzymatic Activity In The Enolase Superfamily: Structural Studies Of The Promiscuous O-Succinylbenzoate Synthase From Amycolatopsis
Biochemistry V. 43 5716 2004
(for further references see the
PDB file header
)
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: N-ACETYLMETHIONINE (AMEa)
1b: N-ACETYLMETHIONINE (AMEb)
1c: N-ACETYLMETHIONINE (AMEc)
1d: N-ACETYLMETHIONINE (AMEd)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AME
4
Ligand/Ion
N-ACETYLMETHIONINE
2
MG
4
Ligand/Ion
MAGNESIUM ION
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:189 , ASN A:191 , GLU A:214 , ASP A:239 , GLU A:240 , AME A:600 , HOH A:673
BINDING SITE FOR RESIDUE MG A 601
2
AC2
SOFTWARE
PHE A:23 , MET A:50 , SER A:135 , LYS A:161 , LYS A:163 , ASP A:189 , GLU A:214 , ASP A:239 , LYS A:263 , GLY A:291 , MET A:292 , ASP A:316 , MG A:601 , HOH A:695
BINDING SITE FOR RESIDUE AME A 600
3
AC3
SOFTWARE
ASP B:189 , ASN B:191 , GLU B:214 , ASP B:239 , AME B:700 , HOH B:775
BINDING SITE FOR RESIDUE MG B 701
4
AC4
SOFTWARE
PHE B:19 , PHE B:23 , MET B:50 , SER B:135 , LYS B:161 , LYS B:163 , ASP B:189 , GLU B:214 , ASP B:239 , ASN B:261 , LYS B:263 , GLY B:291 , ASP B:316 , MG B:701
BINDING SITE FOR RESIDUE AME B 700
5
AC5
SOFTWARE
ASP C:189 , ASN C:191 , GLU C:214 , ASP C:239 , AME C:800 , HOH C:871
BINDING SITE FOR RESIDUE MG C 801
6
AC6
SOFTWARE
MET C:50 , SER C:135 , LYS C:161 , LYS C:163 , ASP C:189 , GLU C:214 , ASP C:239 , LYS C:263 , GLY C:291 , MET C:292 , ILE C:293 , ASP C:316 , MG C:801 , HOH C:895
BINDING SITE FOR RESIDUE AME C 800
7
AC7
SOFTWARE
ASP D:189 , ASN D:191 , GLU D:214 , ASP D:239 , GLU D:240 , AME D:900 , HOH D:970
BINDING SITE FOR RESIDUE MG D 901
8
AC8
SOFTWARE
PHE D:19 , PHE D:23 , MET D:50 , SER D:135 , LYS D:161 , LYS D:163 , ASP D:189 , ASN D:191 , GLU D:214 , ASP D:239 , LYS D:263 , GLY D:291 , ASP D:316 , MG D:901 , HOH D:1000
BINDING SITE FOR RESIDUE AME D 900
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1sjaa2 (A:1-125)
1b: SCOP_d1sjab2 (B:1-125)
1c: SCOP_d1sjac2 (C:1-125)
1d: SCOP_d1sjad2 (D:1-125)
2a: SCOP_d1sjaa1 (A:126-368)
2b: SCOP_d1sjab1 (B:126-368)
2c: SCOP_d1sjac1 (C:126-368)
2d: SCOP_d1sjad1 (D:126-368)
View:
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Classes
(
)
(
)
Folds
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)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Enolase N-terminal domain-like
(211)
Superfamily
:
Enolase N-terminal domain-like
(211)
Family
:
Enolase N-terminal domain-like
(88)
Protein domain
:
N-acylamino acid racemase
(10)
Amycolatopsis sp. [TaxId: 37632]
(4)
1a
d1sjaa2
A:1-125
1b
d1sjab2
B:1-125
1c
d1sjac2
C:1-125
1d
d1sjad2
D:1-125
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Enolase C-terminal domain-like
(212)
Family
:
D-glucarate dehydratase-like
(65)
Protein domain
:
N-acylamino acid racemase
(10)
Amycolatopsis sp. [TaxId: 37632]
(4)
2a
d1sjaa1
A:126-368
2b
d1sjab1
B:126-368
2c
d1sjac1
C:126-368
2d
d1sjad1
D:126-368
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1sjaA02 (A:116-352)
1b: CATH_1sjaB02 (B:116-352)
1c: CATH_1sjaC02 (C:116-352)
1d: CATH_1sjaD02 (D:116-352)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Enolase superfamily
(142)
Amycolatopsis sp.. Organism_taxid: 37632.
(4)
1a
1sjaA02
A:116-352
1b
1sjaB02
B:116-352
1c
1sjaC02
C:116-352
1d
1sjaD02
D:116-352
[
close CATH info
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_MR_MLE_N_1sjaD01 (D:4-124)
1b: PFAM_MR_MLE_N_1sjaD02 (D:4-124)
1c: PFAM_MR_MLE_N_1sjaD03 (D:4-124)
1d: PFAM_MR_MLE_N_1sjaD04 (D:4-124)
2a: PFAM_MR_MLE_1sjaD05 (D:172-239)
2b: PFAM_MR_MLE_1sjaD06 (D:172-239)
2c: PFAM_MR_MLE_1sjaD07 (D:172-239)
2d: PFAM_MR_MLE_1sjaD08 (D:172-239)
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Clans
(
)
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Families
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)
(
)
Organisms
(
)
(
)
Clan
:
Enolase_N
(69)
Family
:
MR_MLE_N
(47)
Amycolatopsis sp
(4)
1a
MR_MLE_N-1sjaD01
D:4-124
1b
MR_MLE_N-1sjaD02
D:4-124
1c
MR_MLE_N-1sjaD03
D:4-124
1d
MR_MLE_N-1sjaD04
D:4-124
Clan
:
Enolase_TIM
(82)
Family
:
MR_MLE
(48)
Amycolatopsis sp
(4)
2a
MR_MLE-1sjaD05
D:172-239
2b
MR_MLE-1sjaD06
D:172-239
2c
MR_MLE-1sjaD07
D:172-239
2d
MR_MLE-1sjaD08
D:172-239
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Chain D
Asymmetric Unit 1
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Asym.Unit (243 KB)
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