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1SID
Biol. Unit 1
Info
Asym.Unit (364 KB)
Biol.Unit 1, α-C (20.2 MB)
Biol.Unit 1 (20.2 MB)
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(1)
Title
:
MURINE POLYOMAVIRUS COMPLEXED WITH 3'SIALYL LACTOSE
Authors
:
T. Stehle, S. C. Harrison
Date
:
12 Dec 95 (Deposition) - 20 Jun 96 (Release) - 04 Aug 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.65
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (60x)
Keywords
:
Coat Protein, Icosahedral Virus
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Stehle, S. C. Harrison
Crystal Structures Of Murine Polyomavirus In Complex With Straight-Chain And Branched-Chain Sialyloligosaccharide Receptor Fragments.
Structure V. 4 183 1996
(for further references see the
PDB file header
)
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Hetero Components
(3, 1080)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
1c: BETA-D-GLUCOSE (BGCc)
1d: BETA-D-GLUCOSE (BGCd)
1e: BETA-D-GLUCOSE (BGCe)
1f: BETA-D-GLUCOSE (BGCf)
2a: BETA-D-GALACTOSE (GALa)
2b: BETA-D-GALACTOSE (GALb)
2c: BETA-D-GALACTOSE (GALc)
2d: BETA-D-GALACTOSE (GALd)
2e: BETA-D-GALACTOSE (GALe)
2f: BETA-D-GALACTOSE (GALf)
3a: O-SIALIC ACID (SIAa)
3b: O-SIALIC ACID (SIAb)
3c: O-SIALIC ACID (SIAc)
3d: O-SIALIC ACID (SIAd)
3e: O-SIALIC ACID (SIAe)
3f: O-SIALIC ACID (SIAf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
360
Ligand/Ion
BETA-D-GLUCOSE
2
GAL
360
Ligand/Ion
BETA-D-GALACTOSE
3
SIA
360
Ligand/Ion
O-SIALIC ACID
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:72 , ARG A:77 , GLY A:78 , THR A:291 , VAL A:296 , HIS A:298 , GAL A:385 , ASP B:85
BINDING SITE FOR RESIDUE SIA A 384
02
AC2
SOFTWARE
GLY A:78 , ASN A:93 , SIA A:384 , BGC A:386
BINDING SITE FOR RESIDUE GAL A 385
03
AC3
SOFTWARE
GAL A:385
BINDING SITE FOR RESIDUE BGC A 386
04
AC4
SOFTWARE
TYR B:72 , ARG B:77 , THR B:291 , VAL B:296 , HIS B:298 , GAL B:385
BINDING SITE FOR RESIDUE SIA B 384
05
AC5
SOFTWARE
GLY B:78 , ASN B:93 , SIA B:384 , BGC B:386
BINDING SITE FOR RESIDUE GAL B 385
06
AC6
SOFTWARE
GAL B:385
BINDING SITE FOR RESIDUE BGC B 386
07
AC7
SOFTWARE
TYR C:72 , ARG C:77 , THR C:291 , HIS C:298 , GAL C:385
BINDING SITE FOR RESIDUE SIA C 384
08
AC8
SOFTWARE
GLY C:78 , ASN C:93 , SIA C:384 , BGC C:386
BINDING SITE FOR RESIDUE GAL C 385
09
AC9
SOFTWARE
GAL C:385
BINDING SITE FOR RESIDUE BGC C 386
10
BC1
SOFTWARE
TYR D:72 , ARG D:77 , VAL D:296 , HIS D:298 , GAL D:385 , ASP E:85
BINDING SITE FOR RESIDUE SIA D 384
11
BC2
SOFTWARE
GLY D:78 , ASN D:93 , SIA D:384 , BGC D:386
BINDING SITE FOR RESIDUE GAL D 385
12
BC3
SOFTWARE
GAL D:385
BINDING SITE FOR RESIDUE BGC D 386
13
BC4
SOFTWARE
TYR E:72 , ARG E:77 , GLY E:78 , THR E:291 , VAL E:296 , HIS E:298 , GAL E:385
BINDING SITE FOR RESIDUE SIA E 384
14
BC5
SOFTWARE
GLY E:78 , ILE E:79 , ASN E:93 , THR E:94 , SIA E:384 , BGC E:386
BINDING SITE FOR RESIDUE GAL E 385
15
BC6
SOFTWARE
GAL E:385
BINDING SITE FOR RESIDUE BGC E 386
16
BC7
SOFTWARE
TYR F:72 , ARG F:77 , THR F:291 , ASN F:293 , VAL F:296 , HIS F:298 , GAL F:385
BINDING SITE FOR RESIDUE SIA F 384
17
BC8
SOFTWARE
GLY F:78 , ILE F:79 , ASN F:93 , SIA F:384 , BGC F:386
BINDING SITE FOR RESIDUE GAL F 385
18
BC9
SOFTWARE
GAL F:385
BINDING SITE FOR RESIDUE BGC F 386
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1sida_ (A:)
1b: SCOP_d1sidb_ (B:)
1c: SCOP_d1sidc_ (C:)
1d: SCOP_d1sidd_ (D:)
1e: SCOP_d1side_ (E:)
1f: SCOP_d1sidf_ (F:)
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)
(
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(
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(
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Nucleoplasmin-like/VP (viral coat and capsid proteins)
(278)
Superfamily
:
Group I dsDNA viruses
(30)
Family
:
Papovaviridae-like VP
(19)
Protein domain
:
Polyomavirus coat proteins
(6)
Murine polyomavirus, strain small-plaque 16 [TaxId: 10634]
(5)
1a
d1sida_
A:
1b
d1sidb_
B:
1c
d1sidc_
C:
1d
d1sidd_
D:
1e
d1side_
E:
1f
d1sidf_
F:
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close SCOP info
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1sidD00 (D:17-356)
1b: CATH_1sidF00 (F:18-371)
1c: CATH_1sidC00 (C:17-373)
1d: CATH_1sidA00 (A:17-382)
1e: CATH_1sidB00 (B:17-383)
1f: CATH_1sidE00 (E:17-383)
View:
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)
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Architectures
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)
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Polyomavirus Vp1; Chain A
(9)
Homologous Superfamily
:
Polyomavirus Vp1, chain A
(8)
Mouse polyomavirus (strain p16 small- plaque). Organism_taxid: 47935.Strain: small-plaque p16
(2)
1a
1sidD00
D:17-356
1b
1sidF00
F:18-371
1c
1sidC00
C:17-373
1d
1sidA00
A:17-382
1e
1sidB00
B:17-383
1f
1sidE00
E:17-383
[
close CATH info
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Polyoma_coat_1sidF01 (F:28-338)
1b: PFAM_Polyoma_coat_1sidF02 (F:28-338)
1c: PFAM_Polyoma_coat_1sidF03 (F:28-338)
1d: PFAM_Polyoma_coat_1sidF04 (F:28-338)
1e: PFAM_Polyoma_coat_1sidF05 (F:28-338)
1f: PFAM_Polyoma_coat_1sidF06 (F:28-338)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Polyoma_coat]
(8)
Family
:
Polyoma_coat
(8)
Murine polyomavirus (strain P16 small-plaque) (MPyV)
(4)
1a
Polyoma_coat-1sidF01
F:28-338
1b
Polyoma_coat-1sidF02
F:28-338
1c
Polyoma_coat-1sidF03
F:28-338
1d
Polyoma_coat-1sidF04
F:28-338
1e
Polyoma_coat-1sidF05
F:28-338
1f
Polyoma_coat-1sidF06
F:28-338
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Atom Selection
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Protein
Nucleic
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Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
Asymmetric Unit 2
Asymmetric Unit 3
Asymmetric Unit 4
Asymmetric Unit 5
Asymmetric Unit 6
Asymmetric Unit 7
Asymmetric Unit 8
Asymmetric Unit 9
Asymmetric Unit 10
Asymmetric Unit 11
Asymmetric Unit 12
Asymmetric Unit 13
Asymmetric Unit 14
Asymmetric Unit 15
Asymmetric Unit 16
Asymmetric Unit 17
Asymmetric Unit 18
Asymmetric Unit 19
Asymmetric Unit 20
Asymmetric Unit 21
Asymmetric Unit 22
Asymmetric Unit 23
Asymmetric Unit 24
Asymmetric Unit 25
Asymmetric Unit 26
Asymmetric Unit 27
Asymmetric Unit 28
Asymmetric Unit 29
Asymmetric Unit 30
Asymmetric Unit 31
Asymmetric Unit 32
Asymmetric Unit 33
Asymmetric Unit 34
Asymmetric Unit 35
Asymmetric Unit 36
Asymmetric Unit 37
Asymmetric Unit 38
Asymmetric Unit 39
Asymmetric Unit 40
Asymmetric Unit 41
Asymmetric Unit 42
Asymmetric Unit 43
Asymmetric Unit 44
Asymmetric Unit 45
Asymmetric Unit 46
Asymmetric Unit 47
Asymmetric Unit 48
Asymmetric Unit 49
Asymmetric Unit 50
Asymmetric Unit 51
Asymmetric Unit 52
Asymmetric Unit 53
Asymmetric Unit 54
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Asymmetric Unit 57
Asymmetric Unit 58
Asymmetric Unit 59
Asymmetric Unit 60
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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