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1SI2
Asym. Unit
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Asym.Unit (29 KB)
Biol.Unit 1 (49 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE PAZ DOMAIN OF HUMAN EIF2C1 IN COMPLEX WITH A 9-MER SIRNA-LIKE DUPLEX OF DEOXYNUCLEOTIDE OVERHANG
Authors
:
K. Ye, J. B. Ma, D. Patel
Date
:
26 Feb 04 (Deposition) - 25 May 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Protein-Rna Complex, Rna Interference, Double Helix, Overhang, Gene Regulation/Rna/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. B. Ma, K. Ye, D. J. Patel
Structural Basis For Overhang-Specific Small Interfering Rna Recognition By The Paz Domain.
Nature V. 429 318 2004
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PAZ (A:226-346)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PAZ
PS50821
PAZ domain profile.
AGO1_HUMAN
226-346
1
A:226-346
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Exons
(4, 4)
Info
All Exons
Exon 1.7 (A:224-262)
Exon 1.8 (A:262-291)
Exon 1.9 (A:291-340 (gaps))
Exon 1.10 (A:341-349)
View:
Select:
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All Exon Boundaries
1: Boundary 1.6/1.7
2: Boundary 1.7/1.8
3: Boundary 1.8/1.9
4: Boundary 1.9/1.10
5: Boundary 1.10/1.11
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2
ENST00000373204
2
ENSE00001459761
chr1:
36348810-36349047
238
AGO1_HUMAN
1-9
9
0
-
-
1.3
ENST00000373204
3
ENSE00001725818
chr1:
36354028-36354211
184
AGO1_HUMAN
9-70
62
0
-
-
1.4
ENST00000373204
4
ENSE00001630070
chr1:
36358158-36358278
121
AGO1_HUMAN
70-110
41
0
-
-
1.5
ENST00000373204
5
ENSE00000766012
chr1:
36358698-36358879
182
AGO1_HUMAN
111-171
61
0
-
-
1.6
ENST00000373204
6
ENSE00001684483
chr1:
36359275-36359411
137
AGO1_HUMAN
171-217
47
0
-
-
1.7
ENST00000373204
7
ENSE00000766016
chr1:
36359638-36359772
135
AGO1_HUMAN
217-262
46
1
A:224-262
39
1.8
ENST00000373204
8
ENSE00001644212
chr1:
36359916-36360003
88
AGO1_HUMAN
262-291
30
1
A:262-291
30
1.9
ENST00000373204
9
ENSE00001795442
chr1:
36360723-36360870
148
AGO1_HUMAN
291-340
50
1
A:291-340 (gaps)
50
1.10
ENST00000373204
10
ENSE00000594948
chr1:
36367075-36367194
120
AGO1_HUMAN
341-380
40
1
A:341-349
9
1.11
ENST00000373204
11
ENSE00000766075
chr1:
36367549-36367671
123
AGO1_HUMAN
381-421
41
0
-
-
1.12
ENST00000373204
12
ENSE00000766077
chr1:
36367805-36367938
134
AGO1_HUMAN
422-466
45
0
-
-
1.13
ENST00000373204
13
ENSE00000766079
chr1:
36372536-36372720
185
AGO1_HUMAN
466-528
63
0
-
-
1.14
ENST00000373204
14
ENSE00000766081
chr1:
36379443-36379602
160
AGO1_HUMAN
528-581
54
0
-
-
1.15
ENST00000373204
15
ENSE00000766083
chr1:
36379785-36379875
91
AGO1_HUMAN
581-611
31
0
-
-
1.16
ENST00000373204
16
ENSE00000766085
chr1:
36380949-36381143
195
AGO1_HUMAN
612-676
65
0
-
-
1.17
ENST00000373204
17
ENSE00000766086
chr1:
36383194-36383328
135
AGO1_HUMAN
677-721
45
0
-
-
1.18
ENST00000373204
18
ENSE00000766088
chr1:
36383923-36384024
102
AGO1_HUMAN
722-755
34
0
-
-
1.19
ENST00000373204
19
ENSE00001631240
chr1:
36384656-36384855
200
AGO1_HUMAN
756-822
67
0
-
-
1.20b
ENST00000373204
20b
ENSE00001459760
chr1:
36385100-36389900
4801
AGO1_HUMAN
822-857
36
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1si2a_ (A:)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
PAZ domain
(15)
Family
:
PAZ domain
(15)
Protein domain
:
Eukaryotic translation initiation factor 2C 1, EIF2C1
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1si2a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1si2A00 (A:224-349)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Complex
(381)
Topology
:
paz domain
(7)
Homologous Superfamily
:
paz domain
(7)
[unclassified]
(2)
1a
1si2A00
A:224-349
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_PAZ_1si2A01 (A:233-349)
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Clans
(
)
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)
Families
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(
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)
(
)
Clan
:
no clan defined [family: PAZ]
(14)
Family
:
PAZ
(14)
Homo sapiens (Human)
(8)
1a
PAZ-1si2A01
A:233-349
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Asym.Unit (29 KB)
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