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1SHW
Asym. Unit
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Asym.Unit (65 KB)
Biol.Unit 1 (60 KB)
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(1)
Title
:
EPHB2 / EPHRINA5 COMPLEX STRUCTURE
Authors
:
J. P. Himanen, M. J. Chumley, M. Lackmann, C. Li, W. A. Barton, P. D. Jeffr C. Vearing, D. Geleick, D. A. Feldheim, A. W. Boyd
Date
:
26 Feb 04 (Deposition) - 18 May 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Receptor Tyrosine Kinase, Ephrin Signaling, Hormone-Growth Factor- Receptor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. P. Himanen, M. J. Chumley, M. Lackmann, C. Li, W. A. Barton, P. D. Jeffrey, C. Vearing, D. Geleick, D. A. Feldheim, A. W. Boyd, M. Henkemeyer, D. B. Nikolov
Repelling Class Discrimination: Ephrin-A5 Binds To And Activates Ephb2 Receptor Signaling
Nat. Neurosci. V. 7 501 2004
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2a: ZINC ION (ZNa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
2
ZN
1
Ligand/Ion
ZINC ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:39 , ASN A:41 , ASN A:44 , PRO A:67 , HIS A:68 , NAG A:402
BINDING SITE FOR RESIDUE NAG A 401
2
AC2
SOFTWARE
TYR A:39 , NAG A:401 , NAG A:403 , HOH A:1103
BINDING SITE FOR RESIDUE NAG A 402
3
AC3
SOFTWARE
NAG A:402 , HOH A:1103
BINDING SITE FOR RESIDUE NAG A 403
4
AC4
SOFTWARE
HIS A:53 , ASP A:55 , ASP A:89 , HOH A:1036
BINDING SITE FOR RESIDUE ZN A 1001
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: EPH_LBD (B:228-407)
2: EPHRIN_RBD_2 (A:33-167)
3: EPHRIN_RBD_1 (A:117-144)
4: RECEPTOR_TYR_KIN_V_1 (B:386-406)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EPH_LBD
PS51550
Eph receptor ligand-binding domain profile.
EPHB2_MOUSE
20-202
1
B:228-407
2
EPHRIN_RBD_2
PS51551
Ephrin receptor-binding (ephrin RBD) domain profile.
EFNA5_MOUSE
29-162
1
A:33-167
3
EPHRIN_RBD_1
PS01299
Ephrin receptor-binding (ephrin RBD) domain signature.
EFNA5_MOUSE
113-140
1
A:117-144
4
RECEPTOR_TYR_KIN_V_1
PS00790
Receptor tyrosine kinase class V signature 1.
EPHB2_MOUSE
178-198
1
B:386-406
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1shwa_ (A:)
2a: SCOP_d1shwb_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Ephrin ectodomain
(11)
Protein domain
:
Ephrin-a5
(2)
Mouse (Mus musculus) [TaxId: 10090]
(2)
1a
d1shwa_
A:
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
Ephrin receptor ligand binding domain
(15)
Protein domain
:
Ligand-binding domain of the ephb2 receptor tyrosine kinase
(4)
Mouse (Mus musculus) [TaxId: 10090]
(4)
2a
d1shwb_
B:
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1shwA00 (A:32-170)
2a: CATH_1shwB00 (B:227-407)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
House mouse (Mus musculus)
(4)
1a
1shwA00
A:32-170
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Galactose-binding domain-like
(195)
House mouse (Mus musculus)
(6)
2a
1shwB00
B:227-407
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Ephrin_1shwA01 (A:32-169)
2a: PFAM_Ephrin_lbd_1shwB01 (B:236-407)
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Clans
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)
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)
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)
Clan
:
CU_oxidase
(192)
Family
:
Ephrin
(10)
Mus musculus (Mouse)
(3)
1a
Ephrin-1shwA01
A:32-169
Clan
:
GBD
(153)
Family
:
Ephrin_lbd
(12)
Mus musculus (Mouse)
(3)
2a
Ephrin_lbd-1shwB01
B:236-407
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Asymmetric Unit 1
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