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1SHR
Asym. Unit
Info
Asym.Unit (114 KB)
Biol.Unit 1 (108 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FERROCYANIDE BOUND HUMAN HEMOGLOBIN A2 AT 1.88A RESOLUTION
Authors
:
U. Sen, J. Dasgupta, D. Choudhury, P. Datta, A. Chakrabarti, S. B. Chakrabarty, A. Chakrabarty, J. K. Dattagupta
Date
:
26 Feb 04 (Deposition) - 26 Oct 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.88
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Hemoglobin A2, Ferrocyanide Binding, Oxygen Transport, Beta- Thalassemia, Oxygen Storage/Transport Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
U. Sen, J. Dasgupta, D. Choudhury, P. Datta, A. Chakrabarti, S. B. Chakrabarty, A. Chakrabarty, J. K. Dattagupta
Crystal Structures Of Hba2 And Hbe And Modeling Of Hemoglobin Delta4: Interpretation Of The Thermal Stability And The Antisickling Effect Of Hba2 And Identification Of The Ferrocyanide Binding Site In Hb
Biochemistry V. 43 12477 2004
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 17)
Info
All Hetero Components
1a: CYANIDE ION (CYNa)
1b: CYANIDE ION (CYNb)
1c: CYANIDE ION (CYNc)
1d: CYANIDE ION (CYNd)
1e: CYANIDE ION (CYNe)
1f: CYANIDE ION (CYNf)
1g: CYANIDE ION (CYNg)
1h: CYANIDE ION (CYNh)
1i: CYANIDE ION (CYNi)
1j: CYANIDE ION (CYNj)
2a: FE (III) ION (FEa)
2b: FE (III) ION (FEb)
2c: FE (III) ION (FEc)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
3d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CYN
10
Ligand/Ion
CYANIDE ION
2
FE
3
Ligand/Ion
FE (III) ION
3
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
[
close Hetero Component info
]
Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:29 , HIS A:58 , VAL A:62 , HEM A:142
BINDING SITE FOR RESIDUE CYN A 143
02
AC2
SOFTWARE
LEU B:28 , HIS B:63 , VAL B:67 , HEM B:347
BINDING SITE FOR RESIDUE CYN B 348
03
AC3
SOFTWARE
LEU C:29 , HIS C:58 , VAL C:62 , HEM C:542
BINDING SITE FOR RESIDUE CYN C 543
04
AC4
SOFTWARE
LEU D:28 , PHE D:42 , HIS D:63 , VAL D:67 , HEM D:747
BINDING SITE FOR RESIDUE CYN D 748
05
AC5
SOFTWARE
HIS B:143 , HIS B:146 , CYN B:809 , HIS D:146
BINDING SITE FOR RESIDUE FE B 801
06
AC6
SOFTWARE
HIS D:143 , CYN D:808
BINDING SITE FOR RESIDUE FE D 802
07
AC7
SOFTWARE
ASP A:75 , MET A:76 , PRO A:77 , HOH A:1143 , HOH A:1248
BINDING SITE FOR RESIDUE FE A 803
08
AC8
SOFTWARE
LYS B:82 , HIS B:143 , CYN B:809 , CYN D:805 , CYN D:806 , CYN D:807
BINDING SITE FOR RESIDUE CYN B 804
09
AC9
SOFTWARE
CYN B:804 , CYN B:809 , LYS D:82 , CYN D:806 , CYN D:808 , HOH D:1430 , HOH D:1736
BINDING SITE FOR RESIDUE CYN D 805
10
BC1
SOFTWARE
CYN B:804 , CYN D:805 , CYN D:807 , CYN D:808
BINDING SITE FOR RESIDUE CYN D 806
11
BC2
SOFTWARE
CYN B:804 , CYN B:809 , TYR D:145 , HIS D:146 , CYN D:806 , CYN D:808
BINDING SITE FOR RESIDUE CYN D 807
12
BC3
SOFTWARE
CYN B:809 , LYS D:82 , HIS D:143 , FE D:802 , CYN D:805 , CYN D:806 , CYN D:807
BINDING SITE FOR RESIDUE CYN D 808
13
BC4
SOFTWARE
HIS B:143 , HIS B:146 , FE B:801 , CYN B:804 , LYS D:82 , HIS D:146 , CYN D:805 , CYN D:807 , CYN D:808
BINDING SITE FOR RESIDUE CYN B 809
14
BC5
SOFTWARE
TYR A:42 , PHE A:43 , PHE A:46 , HIS A:58 , LYS A:61 , LEU A:83 , LEU A:86 , HIS A:87 , LEU A:91 , VAL A:93 , ASN A:97 , PHE A:98 , LEU A:101 , LEU A:136 , CYN A:143 , HOH A:1259 , HOH A:1341 , HOH A:1444 , HOH A:1464 , HOH A:1485 , HOH A:1617 , HOH A:1692
BINDING SITE FOR RESIDUE HEM A 142
15
BC6
SOFTWARE
THR B:38 , PHE B:41 , PHE B:42 , HIS B:63 , LYS B:66 , PHE B:71 , LEU B:88 , HIS B:92 , LEU B:96 , VAL B:98 , ASN B:102 , LEU B:106 , LEU B:141 , CYN B:348 , HOH B:1157 , HOH B:1175 , HOH B:1255 , HOH B:1302 , PRO C:4 , ALA C:5 , THR C:8
BINDING SITE FOR RESIDUE HEM B 347
16
BC7
SOFTWARE
TYR C:42 , PHE C:43 , HIS C:45 , PHE C:46 , HIS C:58 , LYS C:61 , LEU C:83 , LEU C:86 , HIS C:87 , LEU C:91 , VAL C:93 , ASN C:97 , PHE C:98 , LEU C:101 , LEU C:136 , CYN C:543 , HOH C:1284 , HOH C:1633 , HOH C:1698
BINDING SITE FOR RESIDUE HEM C 542
17
BC8
SOFTWARE
THR D:38 , PHE D:41 , PHE D:42 , HIS D:63 , ALA D:70 , HIS D:92 , LEU D:96 , VAL D:98 , ASN D:102 , PHE D:103 , LEU D:106 , LEU D:141 , CYN D:748 , HOH D:1107 , HOH D:1131 , HOH D:1587 , HOH D:1609 , HOH D:1695
BINDING SITE FOR RESIDUE HEM D 747
[
close Site info
]
SAPs(SNPs)/Variants
(189, 378)
Info
(mutated residues are not available)
All SNPs/Variants
001: VAR_003096 (V1A, chain B/D, )
002: VAR_002719 (V1E, chain A/C, )
003: VAR_030499 (H2L, chain B/D, )
004: VAR_002720 (L2R, chain A/C, )
005: VAR_003097 (H2R, chain B/D, )
006: VAR_018740 (T4I, chain B/D, )
007: VAR_018741 (T4S, chain B/D, )
008: VAR_002721 (A5D, chain A/C, )
009: VAR_002722 (A5P, chain A/C, )
010: VAR_002723 (D6A, chain A/C, )
011: VAR_002724 (D6G, chain A/C, )
012: VAR_002725 (D6N, chain A/C, )
013: VAR_002726 (D6V, chain A/C, )
014: VAR_002727 (D6Y, chain A/C, )
015: VAR_002728 (K7E, chain A/C, )
016: VAR_038149 (N9T, chain A/C, )
017: VAR_030500 (A10D, chain B/D, )
018: VAR_014605 (V10F, chain A/C, )
019: VAR_002729 (K11E, chain A/C, )
020: VAR_030501 (V11G, chain B/D, )
021: VAR_002730 (A12D, chain A/C, )
022: VAR_003098 (N12K, chain B/D, )
023: VAR_038150 (A13P, chain A/C, )
024: VAR_002731 (W14R, chain A/C, )
025: VAR_002732 (G15R, chain A/C, )
026: VAR_002733 (K16M, chain A/C, )
027: VAR_002734 (K16N, chain A/C, )
028: VAR_003099 (G16R, chain B/D, )
029: VAR_002735 (G18D, chain A/C, )
030: VAR_002736 (G18R, chain A/C, )
031: VAR_002737 (A19D, chain A/C, )
032: VAR_002738 (A19E, chain A/C, )
033: VAR_003100 (V20E, chain B/D, )
034: VAR_002739 (H20Q, chain A/C, )
035: VAR_002740 (H20R, chain A/C, )
036: VAR_002741 (A21D, chain A/C, )
037: VAR_002742 (A21P, chain A/C, )
038: VAR_002743 (G22D, chain A/C, )
039: VAR_003101 (A22E, chain B/D, )
040: VAR_002744 (E23G, chain A/C, )
041: VAR_002745 (E23K, chain A/C, )
042: VAR_003102 (G24D, chain B/D, )
043: VAR_002746 (Y24H, chain A/C, )
044: VAR_003103 (G25D, chain B/D, )
045: VAR_003104 (E26D, chain B/D, )
046: VAR_002747 (A26E, chain A/C, )
047: VAR_025387 (A26V, chain A/C, )
048: VAR_002748 (E27D, chain A/C, )
049: VAR_002749 (E27G, chain A/C, )
050: VAR_003105 (A27S, chain B/D, )
051: VAR_002750 (E27V, chain A/C, )
052: VAR_002751 (E30K, chain A/C, )
053: VAR_025002 (R31K, chain A/C, )
054: VAR_002752 (R31S, chain A/C, )
055: VAR_002753 (L34R, chain A/C, )
056: VAR_030502 (P36H, chain B/D, )
057: VAR_002754 (P37R, chain A/C, )
058: VAR_002756 (K40M, chain A/C, )
059: VAR_002757 (T41S, chain A/C, )
060: VAR_003106 (E43G, chain B/D, )
061: VAR_003107 (E43K, chain B/D, )
062: VAR_002758 (F43L, chain A/C, )
063: VAR_002759 (P44L, chain A/C, )
064: VAR_002760 (P44R, chain A/C, )
065: VAR_002761 (H45Q, chain A/C, )
066: VAR_002762 (H45R, chain A/C, )
067: VAR_002763 (D47A, chain A/C, )
068: VAR_002764 (D47G, chain A/C, )
069: VAR_002765 (D47H, chain A/C, )
070: VAR_003108 (D47V, chain B/D, )
071: VAR_002766 (D47Y, chain A/C, )
072: VAR_002767 (L48R, chain A/C, )
073: VAR_002768 (S49R, chain A/C, )
074: VAR_002769 (H50R, chain A/C, )
075: VAR_002770 (G51D, chain A/C, )
076: VAR_002771 (G51R, chain A/C, )
077: VAR_003109 (P51R, chain B/D, )
078: VAR_002772 (A53D, chain A/C, )
079: VAR_002773 (Q54R, chain A/C, )
080: VAR_002774 (K56R, chain A/C, )
081: VAR_002775 (K56T, chain A/C, )
082: VAR_030503 (N57K, chain B/D, )
083: VAR_002776 (G57R, chain A/C, )
084: VAR_025388 (H58Q, chain A/C, )
085: VAR_002777 (H58Y, chain A/C, )
086: VAR_002778 (G59D, chain A/C, )
087: VAR_002779 (G59V, chain A/C, )
088: VAR_002780 (K60N, chain A/C, )
089: VAR_002782 (K61N, chain A/C, )
090: VAR_002783 (K61T, chain A/C, )
091: VAR_002784 (V62M, chain A/C, )
092: VAR_002785 (A63D, chain A/C, )
093: VAR_002786 (D64Y, chain A/C, )
094: VAR_002787 (N68K, chain A/C, )
095: VAR_003110 (G69R, chain B/D, )
096: VAR_030504 (A70G, chain B/D, )
097: VAR_002788 (A71E, chain A/C, )
098: VAR_002789 (A71V, chain A/C, )
099: VAR_002790 (H72R, chain A/C, )
100: VAR_002791 (D74A, chain A/C, )
101: VAR_002792 (D74G, chain A/C, )
102: VAR_002793 (D74N, chain A/C, )
103: VAR_002794 (D75A, chain A/C, )
104: VAR_002795 (D75H, chain A/C, )
105: VAR_003111 (L75V, chain B/D, )
106: VAR_002796 (M76K, chain A/C, )
107: VAR_002797 (M76T, chain A/C, )
108: VAR_002798 (P77R, chain A/C, )
109: VAR_002799 (N78H, chain A/C, )
110: VAR_002800 (N78K, chain A/C, )
111: VAR_012662 (A79G, chain A/C, )
112: VAR_002801 (L80R, chain A/C, )
113: VAR_002802 (S81C, chain A/C, )
114: VAR_002803 (A82D, chain A/C, )
115: VAR_002804 (S84R, chain A/C, )
116: VAR_030505 (F85S, chain B/D, )
117: VAR_002805 (D85V, chain A/C, )
118: VAR_002806 (D85Y, chain A/C, )
119: VAR_002807 (L86R, chain A/C, )
120: VAR_030506 (Q87K, chain B/D, )
121: VAR_002808 (H87N, chain A/C, )
122: VAR_002809 (H87R, chain A/C, )
123: VAR_002810 (A88S, chain A/C, )
124: VAR_030507 (L88V, chain B/D, )
125: VAR_002811 (K90M, chain A/C, )
126: VAR_003112 (E90V, chain B/D, )
127: VAR_049272 (L91F, chain A/C, )
128: VAR_002812 (L91P, chain A/C, )
129: VAR_002813 (R92Q, chain A/C, )
130: VAR_020775 (R92W, chain A/C, )
131: VAR_014277 (C93G, chain B/D, )
132: VAR_025389 (D94A, chain A/C, )
133: VAR_002814 (D94Y, chain A/C, )
134: VAR_002815 (P95A, chain A/C, )
135: VAR_002816 (P95T, chain A/C, )
136: VAR_002817 (N97K, chain A/C, )
137: VAR_003113 (V98M, chain B/D, )
138: VAR_002818 (K99E, chain A/C, )
139: VAR_003114 (D99N, chain B/D, )
140: VAR_002819 (S102R, chain A/C, )
141: VAR_002820 (H103R, chain A/C, )
142: VAR_025390 (H103Y, chain A/C, )
143: VAR_030508 (R104S, chain B/D, )
144: VAR_002821 (L109R, chain A/C, )
145: VAR_002822 (A110D, chain A/C, )
146: VAR_002823 (H112D, chain A/C, )
147: VAR_002824 (L113H, chain A/C, )
148: VAR_002825 (P114L, chain A/C, )
149: VAR_002826 (P114R, chain A/C, )
150: VAR_002827 (P114S, chain A/C, )
151: VAR_002828 (A115D, chain A/C, )
152: VAR_002829 (E116A, chain A/C, )
153: VAR_003115 (R116C, chain B/D, )
154: VAR_003116 (R116H, chain B/D, )
155: VAR_003117 (N117D, chain B/D, )
156: VAR_002833 (A120E, chain A/C, )
157: VAR_002834 (V121M, chain A/C, )
158: VAR_003118 (E121V, chain B/D, )
159: VAR_002835 (H122Q, chain A/C, )
160: VAR_003119 (Q125E, chain B/D, )
161: VAR_002836 (L125P, chain A/C, )
162: VAR_025391 (L125R, chain A/C, )
163: VAR_025392 (D126G, chain A/C, )
164: VAR_002837 (D126V, chain A/C, )
165: VAR_002838 (D126Y, chain A/C, )
166: VAR_002839 (K127N, chain A/C, )
167: VAR_002840 (L129P, chain A/C, )
168: VAR_002842 (A130D, chain A/C, )
169: VAR_002841 (A130P, chain A/C, )
170: VAR_002843 (S131P, chain A/C, )
171: VAR_030509 (V133A, chain B/D, )
172: VAR_002844 (S133R, chain A/C, )
173: VAR_002845 (V135E, chain A/C, )
174: VAR_003120 (G136D, chain B/D, )
175: VAR_002846 (L136M, chain A/C, )
176: VAR_002847 (L136P, chain A/C, )
177: VAR_035242 (L136R, chain A/C, )
178: VAR_002848 (S138P, chain A/C, )
179: VAR_002849 (K139E, chain A/C, )
180: VAR_002850 (K139T, chain A/C, )
181: VAR_002851 (Y140H, chain A/C, )
182: VAR_030510 (A140V, chain B/D, )
183: VAR_002852 (R141C, chain A/C, )
184: VAR_002854 (R141H, chain A/C, )
185: VAR_002853 (R141L, chain A/C, )
186: VAR_002855 (R141P, chain A/C, )
187: VAR_003121 (L141P, chain B/D, )
188: VAR_003122 (A142D, chain B/D, )
189: VAR_014278 (H146R, chain B/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
001
UniProt
VAR_003096
V
2
A
HBD_HUMAN
Polymorphism
34991152
B/D
V
1
A
002
UniProt
VAR_002719
V
2
E
HBA_HUMAN
Unclassified
---
A/C
V
1
E
003
UniProt
VAR_030499
H
3
L
HBD_HUMAN
Unclassified
---
B/D
H
2
L
004
UniProt
VAR_002720
L
3
R
HBA_HUMAN
Polymorphism
36030576
A/C
L
2
R
005
UniProt
VAR_003097
H
3
R
HBD_HUMAN
Polymorphism
35433207
B/D
H
2
R
006
UniProt
VAR_018740
T
5
I
HBD_HUMAN
Polymorphism
35406175
B/D
T
4
I
007
UniProt
VAR_018741
T
5
S
HBD_HUMAN
Polymorphism
35406175
B/D
T
4
S
008
UniProt
VAR_002721
A
6
D
HBA_HUMAN
Polymorphism
34090856
A/C
A
5
D
009
UniProt
VAR_002722
A
6
P
HBA_HUMAN
Polymorphism
34751764
A/C
A
5
P
010
UniProt
VAR_002723
D
7
A
HBA_HUMAN
Polymorphism
33986902
A/C
D
6
A
011
UniProt
VAR_002724
D
7
G
HBA_HUMAN
Unclassified
---
A/C
D
6
G
012
UniProt
VAR_002725
D
7
N
HBA_HUMAN
Polymorphism
33961916
A/C
D
6
N
013
UniProt
VAR_002726
D
7
V
HBA_HUMAN
Unclassified
---
A/C
D
6
V
014
UniProt
VAR_002727
D
7
Y
HBA_HUMAN
Unclassified
---
A/C
D
6
Y
015
UniProt
VAR_002728
K
8
E
HBA_HUMAN
Polymorphism
34817956
A/C
K
7
E
016
UniProt
VAR_038149
N
10
T
HBA_HUMAN
Unclassified
---
A/C
N
9
T
017
UniProt
VAR_030500
A
11
D
HBD_HUMAN
Unclassified
---
B/D
A
10
D
018
UniProt
VAR_014605
V
11
F
HBA_HUMAN
Polymorphism
1799896
A/C
V
10
F
019
UniProt
VAR_002729
K
12
E
HBA_HUMAN
Unclassified
---
A/C
K
11
E
020
UniProt
VAR_030501
V
12
G
HBD_HUMAN
Polymorphism
34090605
B/D
V
11
G
021
UniProt
VAR_002730
A
13
D
HBA_HUMAN
Polymorphism
35615982
A/C
A
12
D
022
UniProt
VAR_003098
N
13
K
HBD_HUMAN
Polymorphism
34313675
B/D
N
12
K
023
UniProt
VAR_038150
A
14
P
HBA_HUMAN
Polymorphism
35331909
A/C
A
13
P
024
UniProt
VAR_002731
W
15
R
HBA_HUMAN
Polymorphism
33964317
A/C
W
14
R
025
UniProt
VAR_002732
G
16
R
HBA_HUMAN
Polymorphism
35816645
A/C
G
15
R
026
UniProt
VAR_002733
K
17
M
HBA_HUMAN
Polymorphism
35210126
A/C
K
16
M
027
UniProt
VAR_002734
K
17
N
HBA_HUMAN
Polymorphism
33923844
A/C
K
16
N
028
UniProt
VAR_003099
G
17
R
HBD_HUMAN
Polymorphism
34012192
B/D
G
16
R
029
UniProt
VAR_002735
G
19
D
HBA_HUMAN
Polymorphism
35993097
A/C
G
18
D
030
UniProt
VAR_002736
G
19
R
HBA_HUMAN
Polymorphism
34504387
A/C
G
18
R
031
UniProt
VAR_002737
A
20
D
HBA_HUMAN
Unclassified
---
A/C
A
19
D
032
UniProt
VAR_002738
A
20
E
HBA_HUMAN
Polymorphism
35628685
A/C
A
19
E
033
UniProt
VAR_003100
V
21
E
HBD_HUMAN
Polymorphism
34093840
B/D
V
20
E
034
UniProt
VAR_002739
H
21
Q
HBA_HUMAN
Polymorphism
41525149
A/C
H
20
Q
035
UniProt
VAR_002740
H
21
R
HBA_HUMAN
Polymorphism
33943087
A/C
H
20
R
036
UniProt
VAR_002741
A
22
D
HBA_HUMAN
Polymorphism
11548605
A/C
A
21
D
037
UniProt
VAR_002742
A
22
P
HBA_HUMAN
Polymorphism
34324664
A/C
A
21
P
038
UniProt
VAR_002743
G
23
D
HBA_HUMAN
Polymorphism
34608326
A/C
G
22
D
039
UniProt
VAR_003101
A
23
E
HBD_HUMAN
Polymorphism
35395083
B/D
A
22
E
040
UniProt
VAR_002744
E
24
G
HBA_HUMAN
Polymorphism
33939421
A/C
E
23
G
041
UniProt
VAR_002745
E
24
K
HBA_HUMAN
Unclassified
---
A/C
E
23
K
042
UniProt
VAR_003102
G
25
D
HBD_HUMAN
Polymorphism
34460332
B/D
G
24
D
043
UniProt
VAR_002746
Y
25
H
HBA_HUMAN
Unclassified
---
A/C
Y
24
H
044
UniProt
VAR_003103
G
26
D
HBD_HUMAN
Polymorphism
34389944
B/D
G
25
D
045
UniProt
VAR_003104
E
27
D
HBD_HUMAN
Polymorphism
34289459
B/D
E
26
D
046
UniProt
VAR_002747
A
27
E
HBA_HUMAN
Unclassified
---
A/C
A
26
E
047
UniProt
VAR_025387
A
27
V
HBA_HUMAN
Unclassified
---
A/C
A
26
V
048
UniProt
VAR_002748
E
28
D
HBA_HUMAN
Unclassified
---
A/C
E
27
D
049
UniProt
VAR_002749
E
28
G
HBA_HUMAN
Unclassified
---
A/C
E
27
G
050
UniProt
VAR_003105
A
28
S
HBD_HUMAN
Polymorphism
35152987
B/D
A
27
S
051
UniProt
VAR_002750
E
28
V
HBA_HUMAN
Unclassified
---
A/C
E
27
V
052
UniProt
VAR_002751
E
31
K
HBA_HUMAN
Unclassified
---
A/C
E
30
K
053
UniProt
VAR_025002
R
32
K
HBA_HUMAN
Unclassified
---
A/C
R
31
K
054
UniProt
VAR_002752
R
32
S
HBA_HUMAN
Unclassified
---
A/C
R
31
S
055
UniProt
VAR_002753
L
35
R
HBA_HUMAN
Unclassified
---
A/C
L
34
R
056
UniProt
VAR_030502
P
37
H
HBD_HUMAN
Polymorphism
34383555
B/D
P
36
H
057
UniProt
VAR_002754
P
38
R
HBA_HUMAN
Unclassified
---
A/C
P
37
R
058
UniProt
VAR_002756
K
41
M
HBA_HUMAN
Unclassified
---
A/C
K
40
M
059
UniProt
VAR_002757
T
42
S
HBA_HUMAN
Unclassified
---
A/C
T
41
S
060
UniProt
VAR_003106
E
44
G
HBD_HUMAN
Polymorphism
36084266
B/D
E
43
G
061
UniProt
VAR_003107
E
44
K
HBD_HUMAN
Polymorphism
35166721
B/D
E
43
K
062
UniProt
VAR_002758
F
44
L
HBA_HUMAN
Unclassified
---
A/C
F
43
L
063
UniProt
VAR_002759
P
45
L
HBA_HUMAN
Polymorphism
41514946
A/C
P
44
L
064
UniProt
VAR_002760
P
45
R
HBA_HUMAN
Unclassified
---
A/C
P
44
R
065
UniProt
VAR_002761
H
46
Q
HBA_HUMAN
Unclassified
---
A/C
H
45
Q
066
UniProt
VAR_002762
H
46
R
HBA_HUMAN
Unclassified
---
A/C
H
45
R
067
UniProt
VAR_002763
D
48
A
HBA_HUMAN
Unclassified
---
A/C
D
47
A
068
UniProt
VAR_002764
D
48
G
HBA_HUMAN
Unclassified
---
A/C
D
47
G
069
UniProt
VAR_002765
D
48
H
HBA_HUMAN
Unclassified
---
A/C
D
47
H
070
UniProt
VAR_003108
D
48
V
HBD_HUMAN
Polymorphism
34977235
B/D
D
47
V
071
UniProt
VAR_002766
D
48
Y
HBA_HUMAN
Unclassified
---
A/C
D
47
Y
072
UniProt
VAR_002767
L
49
R
HBA_HUMAN
Unclassified
---
A/C
L
48
R
073
UniProt
VAR_002768
S
50
R
HBA_HUMAN
Unclassified
---
A/C
S
49
R
074
UniProt
VAR_002769
H
51
R
HBA_HUMAN
Unclassified
---
A/C
H
50
R
075
UniProt
VAR_002770
G
52
D
HBA_HUMAN
Unclassified
---
A/C
G
51
D
076
UniProt
VAR_002771
G
52
R
HBA_HUMAN
Unclassified
---
A/C
G
51
R
077
UniProt
VAR_003109
P
52
R
HBD_HUMAN
Polymorphism
34489183
B/D
P
51
R
078
UniProt
VAR_002772
A
54
D
HBA_HUMAN
Unclassified
---
A/C
A
53
D
079
UniProt
VAR_002773
Q
55
R
HBA_HUMAN
Unclassified
---
A/C
Q
54
R
080
UniProt
VAR_002774
K
57
R
HBA_HUMAN
Unclassified
---
A/C
K
56
R
081
UniProt
VAR_002775
K
57
T
HBA_HUMAN
Unclassified
---
A/C
K
56
T
082
UniProt
VAR_030503
N
58
K
HBD_HUMAN
Polymorphism
35666685
B/D
N
57
K
083
UniProt
VAR_002776
G
58
R
HBA_HUMAN
Unclassified
---
A/C
G
57
R
084
UniProt
VAR_025388
H
59
Q
HBA_HUMAN
Unclassified
---
A/C
H
58
Q
085
UniProt
VAR_002777
H
59
Y
HBA_HUMAN
Unclassified
---
A/C
H
58
Y
086
UniProt
VAR_002778
G
60
D
HBA_HUMAN
Polymorphism
28928878
A/C
G
59
D
087
UniProt
VAR_002779
G
60
V
HBA_HUMAN
Unclassified
---
A/C
G
59
V
088
UniProt
VAR_002780
K
61
N
HBA_HUMAN
Polymorphism
28928887
A/C
K
60
N
089
UniProt
VAR_002782
K
62
N
HBA_HUMAN
Unclassified
---
A/C
K
61
N
090
UniProt
VAR_002783
K
62
T
HBA_HUMAN
Unclassified
---
A/C
K
61
T
091
UniProt
VAR_002784
V
63
M
HBA_HUMAN
Unclassified
---
A/C
V
62
M
092
UniProt
VAR_002785
A
64
D
HBA_HUMAN
Unclassified
---
A/C
A
63
D
093
UniProt
VAR_002786
D
65
Y
HBA_HUMAN
Unclassified
---
A/C
D
64
Y
094
UniProt
VAR_002787
N
69
K
HBA_HUMAN
Polymorphism
1060339
A/C
N
68
K
095
UniProt
VAR_003110
G
70
R
HBD_HUMAN
Polymorphism
35913713
B/D
G
69
R
096
UniProt
VAR_030504
A
71
G
HBD_HUMAN
Unclassified
---
B/D
A
70
G
097
UniProt
VAR_002788
A
72
E
HBA_HUMAN
Unclassified
---
A/C
A
71
E
098
UniProt
VAR_002789
A
72
V
HBA_HUMAN
Unclassified
---
A/C
A
71
V
099
UniProt
VAR_002790
H
73
R
HBA_HUMAN
Unclassified
---
A/C
H
72
R
100
UniProt
VAR_002791
D
75
A
HBA_HUMAN
Unclassified
---
A/C
D
74
A
101
UniProt
VAR_002792
D
75
G
HBA_HUMAN
Unclassified
---
A/C
D
74
G
102
UniProt
VAR_002793
D
75
N
HBA_HUMAN
Unclassified
---
A/C
D
74
N
103
UniProt
VAR_002794
D
76
A
HBA_HUMAN
Unclassified
---
A/C
D
75
A
104
UniProt
VAR_002795
D
76
H
HBA_HUMAN
Unclassified
---
A/C
D
75
H
105
UniProt
VAR_003111
L
76
V
HBD_HUMAN
Polymorphism
34430836
B/D
L
75
V
106
UniProt
VAR_002796
M
77
K
HBA_HUMAN
Unclassified
---
A/C
M
76
K
107
UniProt
VAR_002797
M
77
T
HBA_HUMAN
Unclassified
---
A/C
M
76
T
108
UniProt
VAR_002798
P
78
R
HBA_HUMAN
Unclassified
---
A/C
P
77
R
109
UniProt
VAR_002799
N
79
H
HBA_HUMAN
Unclassified
---
A/C
N
78
H
110
UniProt
VAR_002800
N
79
K
HBA_HUMAN
Unclassified
---
A/C
N
78
K
111
UniProt
VAR_012662
A
80
G
HBA_HUMAN
Unclassified
---
A/C
A
79
G
112
UniProt
VAR_002801
L
81
R
HBA_HUMAN
Unclassified
---
A/C
L
80
R
113
UniProt
VAR_002802
S
82
C
HBA_HUMAN
Unclassified
---
A/C
S
81
C
114
UniProt
VAR_002803
A
83
D
HBA_HUMAN
Unclassified
---
A/C
A
82
D
115
UniProt
VAR_002804
S
85
R
HBA_HUMAN
Unclassified
---
A/C
S
84
R
116
UniProt
VAR_030505
F
86
S
HBD_HUMAN
Polymorphism
35633566
B/D
F
85
S
117
UniProt
VAR_002805
D
86
V
HBA_HUMAN
Unclassified
---
A/C
D
85
V
118
UniProt
VAR_002806
D
86
Y
HBA_HUMAN
Unclassified
---
A/C
D
85
Y
119
UniProt
VAR_002807
L
87
R
HBA_HUMAN
Unclassified
---
A/C
L
86
R
120
UniProt
VAR_030506
Q
88
K
HBD_HUMAN
Unclassified
---
B/D
Q
87
K
121
UniProt
VAR_002808
H
88
N
HBA_HUMAN
Unclassified
---
A/C
H
87
N
122
UniProt
VAR_002809
H
88
R
HBA_HUMAN
Unclassified
---
A/C
H
87
R
123
UniProt
VAR_002810
A
89
S
HBA_HUMAN
Unclassified
---
A/C
A
88
S
124
UniProt
VAR_030507
L
89
V
HBD_HUMAN
Polymorphism
34933313
B/D
L
88
V
125
UniProt
VAR_002811
K
91
M
HBA_HUMAN
Unclassified
---
A/C
K
90
M
126
UniProt
VAR_003112
E
91
V
HBD_HUMAN
Polymorphism
34420481
B/D
E
90
V
127
UniProt
VAR_049272
L
92
F
HBA_HUMAN
Polymorphism
17407508
A/C
L
91
F
128
UniProt
VAR_002812
L
92
P
HBA_HUMAN
Polymorphism
17407508
A/C
L
91
P
129
UniProt
VAR_002813
R
93
Q
HBA_HUMAN
Unclassified
---
A/C
R
92
Q
130
UniProt
VAR_020775
R
93
W
HBA_HUMAN
Unclassified
---
A/C
R
92
W
131
UniProt
VAR_014277
C
94
G
HBD_HUMAN
Polymorphism
28933077
B/D
C
93
G
132
UniProt
VAR_025389
D
95
A
HBA_HUMAN
Unclassified
---
A/C
D
94
A
133
UniProt
VAR_002814
D
95
Y
HBA_HUMAN
Unclassified
---
A/C
D
94
Y
134
UniProt
VAR_002815
P
96
A
HBA_HUMAN
Unclassified
---
A/C
P
95
A
135
UniProt
VAR_002816
P
96
T
HBA_HUMAN
Unclassified
---
A/C
P
95
T
136
UniProt
VAR_002817
N
98
K
HBA_HUMAN
Unclassified
---
A/C
N
97
K
137
UniProt
VAR_003113
V
99
M
HBD_HUMAN
Polymorphism
28933076
B/D
V
98
M
138
UniProt
VAR_002818
K
100
E
HBA_HUMAN
Unclassified
---
A/C
K
99
E
139
UniProt
VAR_003114
D
100
N
HBD_HUMAN
Polymorphism
35329985
B/D
D
99
N
140
UniProt
VAR_002819
S
103
R
HBA_HUMAN
Polymorphism
41344646
A/C
S
102
R
141
UniProt
VAR_002820
H
104
R
HBA_HUMAN
Unclassified
---
A/C
H
103
R
142
UniProt
VAR_025390
H
104
Y
HBA_HUMAN
Unclassified
---
A/C
H
103
Y
143
UniProt
VAR_030508
R
105
S
HBD_HUMAN
Polymorphism
34390965
B/D
R
104
S
144
UniProt
VAR_002821
L
110
R
HBA_HUMAN
Unclassified
---
A/C
L
109
R
145
UniProt
VAR_002822
A
111
D
HBA_HUMAN
Unclassified
---
A/C
A
110
D
146
UniProt
VAR_002823
H
113
D
HBA_HUMAN
Unclassified
---
A/C
H
112
D
147
UniProt
VAR_002824
L
114
H
HBA_HUMAN
Unclassified
---
A/C
L
113
H
148
UniProt
VAR_002825
P
115
L
HBA_HUMAN
Unclassified
---
A/C
P
114
L
149
UniProt
VAR_002826
P
115
R
HBA_HUMAN
Unclassified
---
A/C
P
114
R
150
UniProt
VAR_002827
P
115
S
HBA_HUMAN
Unclassified
---
A/C
P
114
S
151
UniProt
VAR_002828
A
116
D
HBA_HUMAN
Unclassified
---
A/C
A
115
D
152
UniProt
VAR_002829
E
117
A
HBA_HUMAN
Unclassified
---
A/C
E
116
A
153
UniProt
VAR_003115
R
117
C
HBD_HUMAN
Polymorphism
33971270
B/D
R
116
C
154
UniProt
VAR_003116
R
117
H
HBD_HUMAN
Polymorphism
34536353
B/D
R
116
H
155
UniProt
VAR_003117
N
118
D
HBD_HUMAN
Polymorphism
36049174
B/D
N
117
D
156
UniProt
VAR_002833
A
121
E
HBA_HUMAN
Unclassified
---
A/C
A
120
E
157
UniProt
VAR_002834
V
122
M
HBA_HUMAN
Unclassified
---
A/C
V
121
M
158
UniProt
VAR_003118
E
122
V
HBD_HUMAN
Polymorphism
35790721
B/D
E
121
V
159
UniProt
VAR_002835
H
123
Q
HBA_HUMAN
Unclassified
---
A/C
H
122
Q
160
UniProt
VAR_003119
Q
126
E
HBD_HUMAN
Polymorphism
36078803
B/D
Q
125
E
161
UniProt
VAR_002836
L
126
P
HBA_HUMAN
Unclassified
---
A/C
L
125
P
162
UniProt
VAR_025391
L
126
R
HBA_HUMAN
Unclassified
---
A/C
L
125
R
163
UniProt
VAR_025392
D
127
G
HBA_HUMAN
Unclassified
---
A/C
D
126
G
164
UniProt
VAR_002837
D
127
V
HBA_HUMAN
Unclassified
---
A/C
D
126
V
165
UniProt
VAR_002838
D
127
Y
HBA_HUMAN
Unclassified
---
A/C
D
126
Y
166
UniProt
VAR_002839
K
128
N
HBA_HUMAN
Unclassified
---
A/C
K
127
N
167
UniProt
VAR_002840
L
130
P
HBA_HUMAN
Unclassified
---
A/C
L
129
P
168
UniProt
VAR_002842
A
131
D
HBA_HUMAN
Unclassified
---
A/C
A
130
D
169
UniProt
VAR_002841
A
131
P
HBA_HUMAN
Unclassified
---
A/C
A
130
P
170
UniProt
VAR_002843
S
132
P
HBA_HUMAN
Unclassified
---
A/C
S
131
P
171
UniProt
VAR_030509
V
134
A
HBD_HUMAN
Unclassified
---
B/D
V
133
A
172
UniProt
VAR_002844
S
134
R
HBA_HUMAN
Unclassified
---
A/C
S
133
R
173
UniProt
VAR_002845
V
136
E
HBA_HUMAN
Unclassified
---
A/C
V
135
E
174
UniProt
VAR_003120
G
137
D
HBD_HUMAN
Polymorphism
35849348
B/D
G
136
D
175
UniProt
VAR_002846
L
137
M
HBA_HUMAN
Unclassified
---
A/C
L
136
M
176
UniProt
VAR_002847
L
137
P
HBA_HUMAN
Unclassified
---
A/C
L
136
P
177
UniProt
VAR_035242
L
137
R
HBA_HUMAN
Unclassified
---
A/C
L
136
R
178
UniProt
VAR_002848
S
139
P
HBA_HUMAN
Unclassified
---
A/C
S
138
P
179
UniProt
VAR_002849
K
140
E
HBA_HUMAN
Unclassified
---
A/C
K
139
E
180
UniProt
VAR_002850
K
140
T
HBA_HUMAN
Unclassified
---
A/C
K
139
T
181
UniProt
VAR_002851
Y
141
H
HBA_HUMAN
Unclassified
---
A/C
Y
140
H
182
UniProt
VAR_030510
A
141
V
HBD_HUMAN
Unclassified
---
B/D
A
140
V
183
UniProt
VAR_002852
R
142
C
HBA_HUMAN
Unclassified
---
A/C
R
141
C
184
UniProt
VAR_002854
R
142
H
HBA_HUMAN
Unclassified
---
A/C
R
141
H
185
UniProt
VAR_002853
R
142
L
HBA_HUMAN
Unclassified
---
A/C
R
141
L
186
UniProt
VAR_002855
R
142
P
HBA_HUMAN
Unclassified
---
A/C
R
141
P
187
UniProt
VAR_003121
L
142
P
HBD_HUMAN
Unclassified
---
B/D
L
141
P
188
UniProt
VAR_003122
A
143
D
HBD_HUMAN
Unclassified
---
B/D
A
142
D
189
UniProt
VAR_014278
H
147
R
HBD_HUMAN
Unclassified
---
B/D
H
146
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: GLOBIN (B:1-146,D:1-146,A:2-141,C:2-141)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLOBIN
PS01033
Globin family profile.
HBD_HUMAN
2-147
2
B:1-146
D:1-146
HBA_HUMAN
3-142
2
A:2-141
C:2-141
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Exons
(6, 12)
Info
All Exons
Exon 1.3a (A:1-31 | C:1-31)
Exon 1.3e (A:31-99 | C:31-99)
Exon 1.4b (A:100-141 | C:100-141)
Exon 2.2a (B:1-30 | D:1-30)
Exon 2.3b (B:30-104 | D:30-104)
Exon 2.4b (B:105-146 | D:105-146)
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All Exon Boundaries
1: Boundary -/1.3a
2: Boundary 1.3a/1.3e
3: Boundary 1.3e/1.4b
4: Boundary 1.4b/-
5: Boundary -/2.2a
6: Boundary 2.2a/2.3b
7: Boundary 2.3b/2.4b
8: Boundary 2.4b/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000320868
3a
ENSE00001723291
chr16:
226679-226810
132
HBA_HUMAN
1-32
32
2
A:1-31
C:1-31
31
31
1.3e
ENST00000320868
3e
ENSE00001710570
chr16:
226928-227132
205
HBA_HUMAN
32-100
69
2
A:31-99
C:31-99
69
69
1.4b
ENST00000320868
4b
ENSE00001261694
chr16:
227282-227521
240
HBA_HUMAN
101-142
42
2
A:100-141
C:100-141
42
42
2.2a
ENST00000380299
2a
ENSE00001386310
chr11:
5255878-5255572
307
HBD_HUMAN
1-31
31
2
B:1-30
D:1-30
30
30
2.3b
ENST00000380299
3b
ENSE00001057389
chr11:
5255443-5255221
223
HBD_HUMAN
31-105
75
2
B:30-104
D:30-104
75
75
2.4b
ENST00000380299
4b
ENSE00001484514
chr11:
5254322-5254068
255
HBD_HUMAN
106-147
42
2
B:105-146
D:105-146
42
42
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1shra_ (A:)
1b: SCOP_d1shrc_ (C:)
2a: SCOP_d1shrb_ (B:)
2b: SCOP_d1shrd_ (D:)
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Class
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All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
Globin-like
(1308)
Family
:
Globins
(1157)
Protein domain
:
Hemoglobin, alpha-chain
(292)
Human (Homo sapiens) [TaxId: 9606]
(217)
1a
d1shra_
A:
1b
d1shrc_
C:
Protein domain
:
Hemoglobin, beta-chain
(292)
Human (Homo sapiens), delta-chain [TaxId: 9606]
(2)
2a
d1shrb_
B:
2b
d1shrd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1shrB00 (B:1-146)
1b: CATH_1shrD00 (D:1-146)
1c: CATH_1shrA00 (A:1-141)
1d: CATH_1shrC00 (C:1-141)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Globin-like
(786)
Homologous Superfamily
:
Globins
(743)
Human (Homo sapiens)
(198)
1a
1shrB00
B:1-146
1b
1shrD00
D:1-146
1c
1shrA00
A:1-141
1d
1shrC00
C:1-141
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Globin_1shrC01 (C:6-106)
1b: PFAM_Globin_1shrC02 (C:6-106)
1c: PFAM_Globin_1shrD01 (D:7-111)
1d: PFAM_Globin_1shrD02 (D:7-111)
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Clan
:
Globin
(291)
Family
:
Globin
(264)
Homo sapiens (Human)
(107)
1a
Globin-1shrC01
C:6-106
1b
Globin-1shrC02
C:6-106
1c
Globin-1shrD01
D:7-111
1d
Globin-1shrD02
D:7-111
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