PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1SHF
Asym. Unit
Info
Asym.Unit (23 KB)
Biol.Unit 1 (39 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF THE SH3 DOMAIN IN HUMAN FYN; COMPARISON OF THE THREE-DIMENSIONAL STRUCTURES OF SH3 DOMAINS IN TYROSINE KINASES AND SPECTRIN
Authors
:
M. Noble, A. Musacchio, M. Saraste, R. Wierenga
Date
:
19 May 93 (Deposition) - 31 Oct 93 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Phosphotransferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. E. Noble, A. Musacchio, M. Saraste, S. A. Courtneidge, R. K. Wierenga
Crystal Structure Of The Sh3 Domain In Human Fyn; Comparison Of The Three-Dimensional Structures Of Sh3 Domains In Tyrosine Kinases And Spectrin.
Embo J. V. 12 2617 1993
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(2, 4)
Info
All Exons
Exon 1.17e (A:84-115 | B:84-115)
Exon 1.19g (A:115-142 | B:115-142)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.16b/1.17e
2: Boundary 1.17e/1.19g
3: Boundary 1.19g/1.20d
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.9b
ENST00000368667
9b
ENSE00001414024
chr6:
112115089-112114826
264
FYN_HUMAN
-
0
0
-
-
1.11
ENST00000368667
11
ENSE00001344307
chr6:
112101838-112101769
70
FYN_HUMAN
-
0
0
-
-
1.16b
ENST00000368667
16b
ENSE00002172897
chr6:
112041265-112041008
258
FYN_HUMAN
1-83
83
0
-
-
1.17e
ENST00000368667
17e
ENSE00002146962
chr6:
112035646-112035550
97
FYN_HUMAN
83-115
33
2
A:84-115
B:84-115
32
32
1.19g
ENST00000368667
19g
ENSE00002180388
chr6:
112029223-112029125
99
FYN_HUMAN
115-148
34
2
A:115-142
B:115-142
28
28
1.20d
ENST00000368667
20d
ENSE00002152369
chr6:
112025305-112025202
104
FYN_HUMAN
148-183
36
0
-
-
1.21b
ENST00000368667
21b
ENSE00002179099
chr6:
112024237-112024088
150
FYN_HUMAN
183-233
51
0
-
-
1.22b
ENST00000368667
22b
ENSE00002142092
chr6:
112021471-112021307
165
FYN_HUMAN
233-288
56
0
-
-
1.24e
ENST00000368667
24e
ENSE00001880540
chr6:
112017659-112017480
180
FYN_HUMAN
288-348
61
0
-
-
1.25a
ENST00000368667
25a
ENSE00002170268
chr6:
112015907-112015831
77
FYN_HUMAN
348-373
26
0
-
-
1.26
ENST00000368667
26
ENSE00002155280
chr6:
112015731-112015578
154
FYN_HUMAN
374-425
52
0
-
-
1.28a
ENST00000368667
28a
ENSE00002153373
chr6:
111995833-111995702
132
FYN_HUMAN
425-469
45
0
-
-
1.29e
ENST00000368667
29e
ENSE00002112481
chr6:
111983150-111982485
666
FYN_HUMAN
469-537
69
0
-
-
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1shfa_ (A:)
1b: SCOP_d1shfb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
SH3-domain
(369)
Family
:
SH3-domain
(255)
Protein domain
:
Fyn proto-oncogene tyrosine kinase, SH3 domain
(18)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d1shfa_
A:
1b
d1shfb_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1shfA00 (A:84-142)
1b: CATH_1shfB00 (B:84-142)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
SH3 Domains
(267)
Human (Homo sapiens)
(133)
1a
1shfA00
A:84-142
1b
1shfB00
B:84-142
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_SH3_1_1shfB01 (B:88-135)
1b: PFAM_SH3_1_1shfB02 (B:88-135)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
SH3
(175)
Family
:
SH3_1
(141)
Homo sapiens (Human)
(69)
1a
SH3_1-1shfB01
B:88-135
1b
SH3_1-1shfB02
B:88-135
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (23 KB)
Header - Asym.Unit
Biol.Unit 1 (39 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1SHF
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
