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1SGK
Asym. Unit
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Asym.Unit (94 KB)
Biol.Unit 1 (178 KB)
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(1)
Title
:
NUCLEOTIDE-FREE DIPHTHERIA TOXIN
Authors
:
C. E. Bell, D. Eisenberg
Date
:
12 Sep 96 (Deposition) - 23 Dec 96 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Toxin, Adp-Ribosylation, Transferase, Glycosyltransferase, Nad, Adp- Ribosyl Transferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. E. Bell, D. Eisenberg
Crystal Structure Of Nucleotide-Free Diphtheria Toxin.
Biochemistry V. 36 481 1997
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(1, 1)
Info
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1: CAT (UNKNOWN)
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No.
Name
Evidence
Residues
Description
1
CAT
UNKNOWN
GLU A:148
GLU 148 ACTIVE-SITE RESIDUE INVOLVED IN CATALYSIS OF THE ADP-RIBOSYLATION REACTION.
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d1sgka1 (A:381-535)
2a: SCOP_d1sgka2 (A:1-187)
3a: SCOP_d1sgka3 (A:200-380)
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
Diphtheria toxin, C-terminal domain
(9)
Family
:
Diphtheria toxin, C-terminal domain
(7)
Protein domain
:
Diphtheria toxin, C-terminal domain
(7)
Corynebacterium diphtheriae [TaxId: 1717]
(7)
1a
d1sgka1
A:381-535
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ADP-ribosylation
(157)
Superfamily
:
ADP-ribosylation
(157)
Family
:
ADP-ribosylating toxins
(85)
Protein domain
:
Diphtheria toxin, N-terminal domain
(8)
Corynebacterium diphtheriae [TaxId: 1717]
(8)
2a
d1sgka2
A:1-187
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Toxins' membrane translocation domains
(135)
Superfamily
:
Diphtheria toxin, middle domain
(9)
Family
:
Diphtheria toxin, middle domain
(7)
Protein domain
:
Diphtheria toxin, middle domain
(7)
Corynebacterium diphtheriae [TaxId: 1717]
(7)
3a
d1sgka3
A:200-380
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_1sgkA01 (A:1-187)
2a: CATH_1sgkA02 (A:200-379)
3a: CATH_1sgkA03 (A:380-534)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Diphtheria Toxin; domain 1
(22)
Homologous Superfamily
:
Diphtheria Toxin, domain 1
(22)
Corynephage beta. Organism_taxid: 10703.
(2)
1a
1sgkA01
A:1-187
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Globin-like
(786)
Homologous Superfamily
:
Diphtheria toxin, middle domain
(6)
Corynephage beta. Organism_taxid: 10703.
(2)
2a
1sgkA02
A:200-379
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.700, no name defined]
(6)
Corynephage beta. Organism_taxid: 10703.
(2)
3a
1sgkA03
A:380-534
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Pfam Domains
(3, 3)
Info
all PFAM domains
1a: PFAM_Diphtheria_C_1sgkA01 (A:1-187)
2a: PFAM_Diphtheria_R_1sgkA02 (A:381-534)
3a: PFAM_Diphtheria_T_1sgkA03 (A:200-379)
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Clans
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(
)
Organisms
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)
(
)
Clan
:
ADP-ribosyl
(56)
Family
:
Diphtheria_C
(4)
Corynephage beta
(4)
1a
Diphtheria_C-1sgkA01
A:1-187
Clan
:
no clan defined [family: Diphtheria_R]
(4)
Family
:
Diphtheria_R
(4)
Corynephage beta
(4)
2a
Diphtheria_R-1sgkA02
A:381-534
Clan
:
no clan defined [family: Diphtheria_T]
(4)
Family
:
Diphtheria_T
(4)
Corynephage beta
(4)
3a
Diphtheria_T-1sgkA03
A:200-379
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Chain A
Asymmetric Unit 1
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Asym.Unit (94 KB)
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