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1SGJ
Asym. Unit
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Asym.Unit (122 KB)
Biol.Unit 1 (116 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CITRATE LYASE BETA SUBUNIT
Authors
:
S. Eswaramoorthy, S. Swaminathan, S. K. Burley, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date
:
23 Feb 04 (Deposition) - 17 Aug 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.84
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Citrate Lyase Beta Subunit, Trimer, Tim Barrel, Structural Genomics, Psi, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Eswaramoorthy, S. Swaminathan
Crystal Structure Of Citrate Lyase Beta Subunit
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
2a: OXALOACETATE ION (OAAa)
2b: OXALOACETATE ION (OAAb)
2c: OXALOACETATE ION (OAAc)
View:
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No.
Name
Count
Type
Full Name
1
MG
3
Ligand/Ion
MAGNESIUM ION
2
OAA
3
Ligand/Ion
OXALOACETATE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:39 , ARG A:74 , GLU A:129 , TYR A:150 , VAL A:193 , LEU A:219 , ILE A:221 , MG A:286 , HOH A:362 , HOH A:456 , HOH A:470
BINDING SITE FOR RESIDUE OAA A 285
2
AC2
SOFTWARE
ARG A:74 , GLU A:129 , OAA A:285 , HOH A:287 , HOH A:356
BINDING SITE FOR RESIDUE MG A 286
3
AC3
SOFTWARE
ARG B:74 , GLU B:129 , VAL B:193 , LEU B:219 , ILE B:221 , MG B:286 , HOH B:585 , HOH B:813
BINDING SITE FOR RESIDUE OAA B 285
4
AC4
SOFTWARE
ARG B:74 , GLU B:129 , TYR B:150 , OAA B:285 , HOH B:576
BINDING SITE FOR RESIDUE MG B 286
5
AC5
SOFTWARE
ARG C:74 , GLU C:129 , TYR C:150 , VAL C:193 , ILE C:221 , MG C:286 , HOH C:677 , HOH C:1164
BINDING SITE FOR RESIDUE OAA C 285
6
AC6
SOFTWARE
ASP C:39 , ARG C:74 , GLU C:129 , TYR C:150 , ASP C:155 , OAA C:285 , HOH C:578
BINDING SITE FOR RESIDUE MG C 286
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1sgja_ (A:)
1b: SCOP_d1sgjb_ (B:)
1c: SCOP_d1sgjc_ (C:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Phosphoenolpyruvate/pyruvate domain
(92)
Family
:
HpcH/HpaI aldolase
(7)
Protein domain
:
Citrate lyase, beta subunit
(4)
Deinococcus radiodurans [TaxId: 1299]
(1)
1a
d1sgja_
A:
1b
d1sgjb_
B:
1c
d1sgjc_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1sgjA00 (A:4-234)
1b: CATH_1sgjB00 (B:4-234)
1c: CATH_1sgjC00 (C:4-234)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Phosphoenolpyruvate-binding domains
(67)
Deinococcus radiodurans. Organism_taxid: 1299.
(1)
1a
1sgjA00
A:4-234
1b
1sgjB00
B:4-234
1c
1sgjC00
C:4-234
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_HpcH_HpaI_1sgjC01 (C:9-223)
1b: PFAM_HpcH_HpaI_1sgjC02 (C:9-223)
1c: PFAM_HpcH_HpaI_1sgjC03 (C:9-223)
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)
Clan
:
PK_TIM
(63)
Family
:
HpcH_HpaI
(8)
Deinococcus radiodurans
(1)
1a
HpcH_HpaI-1sgjC01
C:9-223
1b
HpcH_HpaI-1sgjC02
C:9-223
1c
HpcH_HpaI-1sgjC03
C:9-223
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Asymmetric Unit 1
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Asym.Unit (122 KB)
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