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1SFT
Asym. Unit
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Asym.Unit (133 KB)
Biol.Unit 1 (129 KB)
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(1)
Title
:
ALANINE RACEMASE
Authors
:
J. P. Shaw, G. A. Petsko, D. Ringe
Date
:
20 Sep 96 (Deposition) - 12 Feb 97 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Alanine, Isomerase, Pyridoxal Phosphate
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. P. Shaw, G. A. Petsko, D. Ringe
Determination Of The Structure Of Alanine Racemase From Bacillus Stearothermophilus At 1. 9-A Resolution.
Biochemistry V. 36 1329 1997
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
2b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
PLP
2
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:39 , ARG A:136 , PLP A:402 , TYR B:265 , CYS B:311 , MET B:312 , HOH B:454
BINDING SITE FOR RESIDUE ACT B 400
2
AC2
SOFTWARE
TYR A:265 , TYR A:284 , CYS A:311 , MET A:312 , HOH A:408 , HOH A:473 , LYS B:39 , ARG B:136 , PLP B:401
BINDING SITE FOR RESIDUE ACT A 401
3
AC3
SOFTWARE
LYS A:39 , TYR A:43 , LEU A:85 , ARG A:136 , HIS A:166 , SER A:204 , ARG A:219 , GLY A:221 , ILE A:222 , TYR A:354 , HOH A:448 , HOH A:463 , HOH A:513 , ACT B:400
BINDING SITE FOR RESIDUE PLP A 402
4
AC4
SOFTWARE
ACT A:401 , LYS B:39 , TYR B:43 , LEU B:85 , ARG B:136 , HIS B:166 , ASN B:203 , SER B:204 , ARG B:219 , GLY B:221 , ILE B:222 , TYR B:354 , HOH B:415 , HOH B:461 , HOH B:486
BINDING SITE FOR RESIDUE PLP B 401
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ALANINE_RACEMASE (A:36-46,B:36-46)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALANINE_RACEMASE
PS00395
Alanine racemase pyridoxal-phosphate attachment site.
ALR_GEOSE
36-46
2
A:36-46
B:36-46
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1sfta1 (A:2-11,A:245-383)
1b: SCOP_d1sftb1 (B:2-11,B:245-381)
2a: SCOP_d1sfta2 (A:12-244)
2b: SCOP_d1sftb2 (B:12-244)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Domain of alpha and beta subunits of F1 ATP synthase-like
(89)
Superfamily
:
Alanine racemase C-terminal domain-like
(25)
Family
:
Alanine racemase
(12)
Protein domain
:
Alanine racemase
(12)
Bacillus stearothermophilus [TaxId: 1422]
(8)
1a
d1sfta1
A:2-11,A:245-383
1b
d1sftb1
B:2-11,B:245-381
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
PLP-binding barrel
(27)
Family
:
Alanine racemase-like, N-terminal domain
(25)
Protein domain
:
Alanine racemase
(12)
Bacillus stearothermophilus [TaxId: 1422]
(8)
2a
d1sfta2
A:12-244
2b
d1sftb2
B:12-244
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1sftA01 (A:14-224)
1b: CATH_1sftB01 (B:14-224)
2a: CATH_1sftB02 (B:2-13,B:244-381)
2b: CATH_1sftA02 (A:2-13,A:244-383)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Alanine racemase
(53)
Geobacillus stearothermophilus. Organism_taxid: 1422. Strain: ifo 12550.
(1)
1a
1sftA01
A:14-224
1b
1sftB01
B:14-224
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Lyase, Ornithine Decarboxylase; Chain A, domain 1
(47)
Homologous Superfamily
:
Lyase, Ornithine Decarboxylase; Chain A, domain 1
(47)
Geobacillus stearothermophilus. Organism_taxid: 1422. Strain: ifo 12550.
(1)
2a
1sftB02
B:2-13,B:244-381
2b
1sftA02
A:2-13,A:244-383
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Ala_racemase_N_1sftB01 (B:12-229)
1b: PFAM_Ala_racemase_N_1sftB02 (B:12-229)
2a: PFAM_Ala_racemase_C_1sftB03 (B:244-369)
2b: PFAM_Ala_racemase_C_1sftB04 (B:244-369)
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Clan
:
TIM_barrel
(694)
Family
:
Ala_racemase_N
(19)
Geobacillus stearothermophilus (Bacillus stearothermophilus)
(6)
1a
Ala_racemase_N-1sftB01
B:12-229
1b
Ala_racemase_N-1sftB02
B:12-229
Clan
:
no clan defined [family: Ala_racemase_C]
(18)
Family
:
Ala_racemase_C
(18)
Geobacillus stearothermophilus (Bacillus stearothermophilus)
(6)
2a
Ala_racemase_C-1sftB03
B:244-369
2b
Ala_racemase_C-1sftB04
B:244-369
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (133 KB)
Header - Asym.Unit
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