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1SFC
Asym. Unit
Info
Asym.Unit (153 KB)
Biol.Unit 1 (51 KB)
Biol.Unit 2 (50 KB)
Biol.Unit 3 (51 KB)
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(1)
Title
:
NEURONAL SYNAPTIC FUSION COMPLEX
Authors
:
R. B. Sutton, A. T. Brunger
Date
:
24 Aug 98 (Deposition) - 28 Oct 98 (Release) - 23 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: I,J,K,L (1x)
Keywords
:
Membrane Fusion Protein Complex, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. B. Sutton, D. Fasshauer, R. Jahn, A. T. Brunger
Crystal Structure Of A Snare Complex Involved In Synaptic Exocytosis At 2. 4 A Resolution.
Nature V. 395 347 1998
[
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Hetero Components
(2, 20)
Info
All Hetero Components
1a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
1b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
1c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
1d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
1e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
1f: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDf)
1g: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDg)
2a: STRONTIUM ION (SRa)
2b: STRONTIUM ION (SRb)
2c: STRONTIUM ION (SRc)
2d: STRONTIUM ION (SRd)
2e: STRONTIUM ION (SRe)
2f: STRONTIUM ION (SRf)
2g: STRONTIUM ION (SRg)
2h: STRONTIUM ION (SRh)
2i: STRONTIUM ION (SRi)
2j: STRONTIUM ION (SRj)
2k: STRONTIUM ION (SRk)
2l: STRONTIUM ION (SRl)
2m: STRONTIUM ION (SRm)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MPD
7
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
2
SR
13
Ligand/Ion
STRONTIUM ION
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HOH D:516
BINDING SITE FOR RESIDUE SR D 288
02
AC2
SOFTWARE
ASP A:68 , HOH A:513 , SER I:75 , GLU I:78 , THR I:79 , HOH I:506 , HOH I:510
BINDING SITE FOR RESIDUE SR A 289
03
AC3
SOFTWARE
SER A:75 , GLU A:78 , THR A:79 , HOH A:507 , ASP I:68 , MPD I:930
BINDING SITE FOR RESIDUE SR A 290
04
AC4
SOFTWARE
ASP F:242 , GLU F:245 , HOH F:504 , HOH F:511 , ASP J:242 , GLU J:245 , HOH J:508
BINDING SITE FOR RESIDUE SR F 291
05
AC5
SOFTWARE
ASP J:218
BINDING SITE FOR RESIDUE SR J 292
06
AC6
SOFTWARE
ASP G:41 , GLU K:37
BINDING SITE FOR RESIDUE SR K 293
07
AC7
SOFTWARE
ASP B:218
BINDING SITE FOR RESIDUE SR B 294
08
AC8
SOFTWARE
GLU C:55 , HOH C:519
BINDING SITE FOR RESIDUE SR C 295
09
AC9
SOFTWARE
ASP C:51 , GLU C:55 , HOH C:519
BINDING SITE FOR RESIDUE SR C 296
10
BC1
SOFTWARE
ASP F:214 , ASP F:218 , HOH F:501
BINDING SITE FOR RESIDUE SR F 297
11
BC2
SOFTWARE
ASP G:51 , GLU G:55 , SR G:299 , SR G:300 , ASP K:51 , GLU K:55
BINDING SITE FOR RESIDUE SR G 298
12
BC3
SOFTWARE
ASP G:51 , SR G:298 , GLU K:52 , GLU K:55
BINDING SITE FOR RESIDUE SR G 299
13
BC4
SOFTWARE
GLU G:55 , SR G:298 , ASP K:51 , GLU K:55 , MPD K:929
BINDING SITE FOR RESIDUE SR G 300
14
BC5
SOFTWARE
ASP B:231 , GLU C:52 , GLN C:53 , GLN E:71 , TYR F:235 , ASN F:236
BINDING SITE FOR RESIDUE MPD F 926
15
BC6
SOFTWARE
ARG A:86 , TRP A:89 , ASP I:57 , SER J:225 , MET J:229
BINDING SITE FOR RESIDUE MPD A 927
16
BC7
SOFTWARE
ASP A:65 , ASP A:68
BINDING SITE FOR RESIDUE MPD A 928
17
BC8
SOFTWARE
SR G:300 , LYS K:76 , ASP K:80 , GLU L:170
BINDING SITE FOR RESIDUE MPD K 929
18
BC9
SOFTWARE
GLN A:76 , THR A:79 , SR A:290 , ASP I:68 , ALA I:69
BINDING SITE FOR RESIDUE MPD I 930
19
CC1
SOFTWARE
GLN K:15
BINDING SITE FOR RESIDUE MPD K 931
20
CC2
SOFTWARE
GLU F:245 , HIS G:66 , GLN G:69 , ASP G:70
BINDING SITE FOR RESIDUE MPD G 932
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(4, 18)
Info
All PROSITE Patterns/Profiles
1: T_SNARE (C:19-81,G:19-81,K:19-81|D:140-202,...)
2: V_SNARE (A:31-91,E:31-91,I:31-91)
3: SYNAPTOBREVIN (A:49-68,E:49-68,I:49-68)
4: SYNTAXIN (B:198-237,F:198-237,J:198-237)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
T_SNARE
PS50192
t-SNARE coiled-coil homology domain profile.
SNP25_RAT
19-81
140-202
6
C:19-81
G:19-81
K:19-81
D:140-202
H:140-202
L:140-202
STX1A_RAT
192-254
3
B:192-254
F:192-254
J:192-254
2
V_SNARE
PS50892
v-SNARE coiled-coil homology domain profile.
VAMP2_RAT
31-91
3
A:31-91
E:31-91
I:31-91
3
SYNAPTOBREVIN
PS00417
Synaptobrevin signature.
VAMP2_RAT
49-68
3
A:49-68
E:49-68
I:49-68
4
SYNTAXIN
PS00914
Syntaxin / epimorphin family signature.
STX1A_RAT
198-237
3
B:198-237
F:198-237
J:198-237
[
close PROSITE info
]
Exons
(2, 6)
Info
All Exons
Exon 1.8 (B:188-226 | F:189-226 | J:186-226)
Exon 1.9 (B:227-259 | F:227-261 | J:227-259)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.7/1.8
2: Boundary 1.8/1.9
3: Boundary 1.9/1.10
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000049601
1
ENSRNOE00000287178
chr12:
22765064-22765004
61
STX1A_RAT
1-10
10
0
-
-
1.2
ENSRNOT00000049601
2
ENSRNOE00000361256
chr12:
22752097-22752020
78
STX1A_RAT
11-36
26
0
-
-
1.3
ENSRNOT00000049601
3
ENSRNOE00000279130
chr12:
22751752-22751653
100
STX1A_RAT
37-70
34
0
-
-
1.4
ENSRNOT00000049601
4
ENSRNOE00000343385
chr12:
22748087-22748013
75
STX1A_RAT
70-95
26
0
-
-
1.5
ENSRNOT00000049601
5
ENSRNOE00000295520
chr12:
22747334-22747261
74
STX1A_RAT
95-119
25
0
-
-
1.6
ENSRNOT00000049601
6
ENSRNOE00000302188
chr12:
22747159-22747051
109
STX1A_RAT
120-156
37
0
-
-
1.7
ENSRNOT00000049601
7
ENSRNOE00000358330
chr12:
22746606-22746533
74
STX1A_RAT
156-180
25
0
-
-
1.8
ENSRNOT00000049601
8
ENSRNOE00000316992
chr12:
22743199-22743062
138
STX1A_RAT
181-226
46
3
B:188-226
F:189-226
J:186-226
39
38
41
1.9
ENSRNOT00000049601
9
ENSRNOE00000335636
chr12:
22739362-22739252
111
STX1A_RAT
227-263
37
3
B:227-259
F:227-261
J:227-259
33
35
33
1.10
ENSRNOT00000049601
10
ENSRNOE00000345574
chr12:
22738422-22737112
1311
STX1A_RAT
264-288
25
0
-
-
[
close EXON info
]
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d1sfca_ (A:)
1b: SCOP_d1sfce_ (E:)
1c: SCOP_d1sfci_ (I:)
2a: SCOP_d1sfcc_ (C:)
2b: SCOP_d1sfck_ (K:)
2c: SCOP_d1sfcl_ (L:)
2d: SCOP_d1sfcd_ (D:)
2e: SCOP_d1sfcg_ (G:)
2f: SCOP_d1sfch_ (H:)
3a: SCOP_d1sfcb_ (B:)
3b: SCOP_d1sfcf_ (F:)
3c: SCOP_d1sfcj_ (J:)
View:
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)
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)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Coiled coil proteins
(689)
Fold
:
Parallel coiled-coil
(407)
Superfamily
:
SNARE fusion complex
(33)
Family
:
SNARE fusion complex
(31)
Protein domain
:
Synaptobrevin
(5)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(3)
1a
d1sfca_
A:
1b
d1sfce_
E:
1c
d1sfci_
I:
Protein domain
:
Synaptosomal-associated protein SNAP-25
(8)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(4)
2a
d1sfcc_
C:
2b
d1sfck_
K:
2c
d1sfcl_
L:
2d
d1sfcd_
D:
2e
d1sfcg_
G:
2f
d1sfch_
H:
Protein domain
:
Syntaxin 1A
(8)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(6)
3a
d1sfcb_
B:
3b
d1sfcf_
F:
3c
d1sfcj_
J:
[
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]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_1sfcA00 (A:25-93)
1b: CATH_1sfcB00 (B:188-259)
1c: CATH_1sfcF00 (F:189-261)
1d: CATH_1sfcJ00 (J:186-259)
1e: CATH_1sfcG00 (G:12-83)
1f: CATH_1sfcK00 (K:11-83)
1g: CATH_1sfcC00 (C:7-83)
1h: CATH_1sfcH00 (H:132-203)
1i: CATH_1sfcL00 (L:132-204)
1j: CATH_1sfcD00 (D:131-204)
1k: CATH_1sfcE00 (E:28-96)
1l: CATH_1sfcI00 (I:26-94)
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)
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(
)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.110, no name defined]
(17)
Norway rat (Rattus norvegicus)
(5)
1a
1sfcA00
A:25-93
1b
1sfcB00
B:188-259
1c
1sfcF00
F:189-261
1d
1sfcJ00
J:186-259
1e
1sfcG00
G:12-83
1f
1sfcK00
K:11-83
1g
1sfcC00
C:7-83
1h
1sfcH00
H:132-203
1i
1sfcL00
L:132-204
1j
1sfcD00
D:131-204
1k
1sfcE00
E:28-96
1l
1sfcI00
I:26-94
[
close CATH info
]
Pfam Domains
(3, 12)
Info
all PFAM domains
1a: PFAM_SNARE_1sfcL01 (L:145-204)
1b: PFAM_SNARE_1sfcL02 (L:145-204)
1c: PFAM_SNARE_1sfcL03 (L:145-204)
1d: PFAM_SNARE_1sfcJ01 (J:197-259)
1e: PFAM_SNARE_1sfcJ02 (J:197-259)
1f: PFAM_SNARE_1sfcJ03 (J:197-259)
2a: PFAM_Synaptobrevin_1sfcI01 (I:28-94)
2b: PFAM_Synaptobrevin_1sfcI02 (I:28-94)
2c: PFAM_Synaptobrevin_1sfcI03 (I:28-94)
3a: PFAM_SNAP_25_1sfcL04 (L:132-141)
3b: PFAM_SNAP_25_1sfcL05 (L:132-141)
3c: PFAM_SNAP_25_1sfcL06 (L:132-141)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
SNARE-fusion
(10)
Family
:
SNARE
(6)
Rattus norvegicus (Rat)
(3)
1a
SNARE-1sfcL01
L:145-204
1b
SNARE-1sfcL02
L:145-204
1c
SNARE-1sfcL03
L:145-204
1d
SNARE-1sfcJ01
J:197-259
1e
SNARE-1sfcJ02
J:197-259
1f
SNARE-1sfcJ03
J:197-259
Family
:
Synaptobrevin
(7)
Rattus norvegicus (Rat)
(4)
2a
Synaptobrevin-1sfcI01
I:28-94
2b
Synaptobrevin-1sfcI02
I:28-94
2c
Synaptobrevin-1sfcI03
I:28-94
Clan
:
no clan defined [family: SNAP-25]
(2)
Family
:
SNAP-25
(2)
Rattus norvegicus (Rat)
(1)
3a
SNAP-25-1sfcL04
L:132-141
3b
SNAP-25-1sfcL05
L:132-141
3c
SNAP-25-1sfcL06
L:132-141
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