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1SER
Asym. Unit
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Asym.Unit (162 KB)
Biol.Unit 1 (156 KB)
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(1)
Title
:
THE 2.9 ANGSTROMS CRYSTAL STRUCTURE OF T. THERMOPHILUS SERYL-TRNA SYNTHETASE COMPLEXED WITH TRNA SER
Authors
:
S. Biou, V. Cusack, A. Yaremchuk, M. Tukalo
Date
:
21 Feb 94 (Deposition) - 30 Apr 94 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,T
Biol. Unit 1: A,B,T (1x)
Keywords
:
Protein-T-Rna Complex, Ligase/Rna Complex
(Keyword Search:
[
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Reference
:
V. Biou, A. Yaremchuk, M. Tukalo, S. Cusack
The 2. 9 A Crystal Structure Of T. Thermophilus Seryl-Trna Synthetase Complexed With Trna(Ser).
Science V. 263 1404 1994
(for further references see the
PDB file header
)
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: 5-METHYLURIDINE 5'-MONOPHOSPHATE (5MUa)
2a: 5,6-DIHYDROURIDINE-5'-MONOPHOSPHAT... (H2Ua)
3a: PSEUDOURIDINE-5'-MONOPHOSPHATE (PSUa)
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No.
Name
Count
Type
Full Name
1
5MU
1
Mod. Nucleotide
5-METHYLURIDINE 5'-MONOPHOSPHATE
2
H2U
1
Mod. Nucleotide
5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
3
PSU
1
Mod. Nucleotide
PSEUDOURIDINE-5'-MONOPHOSPHATE
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1sera1 (A:1-110)
1b: SCOP_d1serb1 (B:501-610)
2a: SCOP_d1sera2 (A:111-421)
2b: SCOP_d1serb2 (B:611-921)
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Protein Domains
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Class
:
All alpha proteins
(14657)
Fold
:
Long alpha-hairpin
(315)
Superfamily
:
tRNA-binding arm
(11)
Family
:
Seryl-tRNA synthetase (SerRS)
(4)
Protein domain
:
Seryl-tRNA synthetase (SerRS)
(4)
Thermus thermophilus, strain hb27 [TaxId: 274]
(4)
1a
d1sera1
A:1-110
1b
d1serb1
B:501-610
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Class II aaRS and biotin synthetases
(165)
Superfamily
:
Class II aaRS and biotin synthetases
(165)
Family
:
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
(103)
Protein domain
:
Seryl-tRNA synthetase (SerRS)
(4)
Thermus thermophilus, strain hb27 [TaxId: 274]
(4)
2a
d1sera2
A:111-421
2b
d1serb2
B:611-921
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1serA02 (A:103-420)
1b: CATH_1serB02 (B:603-920)
2a: CATH_1serB01 (B:501-602)
2b: CATH_1serA01 (A:1-102)
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
BirA Bifunctional Protein; domain 2
(111)
Homologous Superfamily
:
Bira Bifunctional Protein; Domain 2
(111)
Thermus thermophilus. Organism_taxid: 274.
(2)
1a
1serA02
A:103-420
1b
1serB02
B:603-920
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
[code=1.10.287.40, no name defined]
(4)
Thermus thermophilus. Organism_taxid: 274.
(1)
2a
1serB01
B:501-602
2b
1serA01
A:1-102
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Seryl_tRNA_N_1serB01 (B:501-605)
1b: PFAM_Seryl_tRNA_N_1serB02 (B:501-605)
2a: PFAM_tRNA_synt_2b_1serB03 (B:668-840)
2b: PFAM_tRNA_synt_2b_1serB04 (B:668-840)
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Clan
:
tRNA_bind_arm
(7)
Family
:
Seryl_tRNA_N
(5)
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
(3)
1a
Seryl_tRNA_N-1serB01
B:501-605
1b
Seryl_tRNA_N-1serB02
B:501-605
Clan
:
tRNA_synt_II
(64)
Family
:
tRNA-synt_2b
(25)
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
(3)
2a
tRNA-synt_2b-1serB03
B:668-840
2b
tRNA-synt_2b-1serB04
B:668-840
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