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Asym. Unit
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Asym.Unit (29 KB)
Biol.Unit 1 (25 KB)
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(1)
Title
:
ENDOPLASMIC RETICULUM PROTEIN RP19 O95881
Authors
:
Z. -J. Liu, L. Chen, W. Tempel, A. Shah, D. Lee, T. A. Dailey, M. R. Mayer, J. P. Rose, D. C. Richardson, J. S. Richardson, H. A. Dailey, B. -C. Wang Southeast Collaboratory For Structural Genomics (Secsg)
Date
:
17 Feb 04 (Deposition) - 13 Jul 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Endoplasmic Reticulum, Rp19, Structural Genomics, Psi, Protein Structure Initiative, Southeast Collaboratory For Structural Genomics, Secsg, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. -J. Liu, L. Chen, W. Tempel, A. Shah, D. Lee, J. P. Rose, D. C. Richardson, J. S. Richardson, B. -C. Wang
Endoplasmic Reticulum Protein Rp19
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
2a: PLATINUM (II) ION (PTa)
2b: PLATINUM (II) ION (PTb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
3
Ligand/Ion
CHLORIDE ION
2
PT
2
Ligand/Ion
PLATINUM (II) ION
[
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:66 , GLY A:67 , CL A:1003 , CL A:1004 , CL A:1005
BINDING SITE FOR RESIDUE PT A 1001
2
AC2
SOFTWARE
LYS A:123 , HOH A:270 , PT A:1001 , CL A:1004 , CL A:1005
BINDING SITE FOR RESIDUE CL A 1003
3
AC3
SOFTWARE
TRP A:65 , LYS A:123 , PT A:1001 , CL A:1003
BINDING SITE FOR RESIDUE CL A 1004
4
AC4
SOFTWARE
GLY A:67 , ALA A:68 , HIS A:87 , PT A:1001 , CL A:1003
BINDING SITE FOR RESIDUE CL A 1005
5
AC5
SOFTWARE
LYS A:63 , ASP A:96 , GLU A:97
BINDING SITE FOR RESIDUE PT A 1002
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: THIOREDOXIN_1 (A:58-76)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOREDOXIN_1
PS00194
Thioredoxin family active site.
TXD12_HUMAN
58-76
1
A:58-76
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Exons
(7, 7)
Info
All Exons
Exon 1.1a (A:30-33)
Exon 1.2 (A:33-53)
Exon 1.4 (A:53-71)
Exon 1.5 (A:71-95)
Exon 1.6b (A:96-119)
Exon 1.7a (A:119-147)
Exon 1.8c (A:147-164)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6b
6: Boundary 1.6b/1.7a
7: Boundary 1.7a/1.8c
8: Boundary 1.8c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000371626
1a
ENSE00001860135
chr1:
52521843-52520672
1172
TXD12_HUMAN
1-33
33
1
A:30-33
4
1.2
ENST00000371626
2
ENSE00000915802
chr1:
52507269-52507209
61
TXD12_HUMAN
33-53
21
1
A:33-53
21
1.4
ENST00000371626
4
ENSE00000835700
chr1:
52494302-52494250
53
TXD12_HUMAN
53-71
19
1
A:53-71
19
1.5
ENST00000371626
5
ENSE00000835699
chr1:
52493020-52492947
74
TXD12_HUMAN
71-95
25
1
A:71-95
25
1.6b
ENST00000371626
6b
ENSE00000835698
chr1:
52490251-52490182
70
TXD12_HUMAN
96-119
24
1
A:96-119
24
1.7a
ENST00000371626
7a
ENSE00000835697
chr1:
52489246-52489163
84
TXD12_HUMAN
119-147
29
1
A:119-147
29
1.8c
ENST00000371626
8c
ENSE00001455699
chr1:
52486684-52485803
882
TXD12_HUMAN
147-172
26
1
A:147-164
18
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1sena_ (A:)
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Classes
(
)
(
)
Folds
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)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Thioltransferase
(167)
Protein domain
:
Thioredoxin-like protein p19, TLP19
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1sena_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1senA00 (A:30-164)
View:
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Classes
(
)
(
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(
)
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)
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)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Human (Homo sapiens)
(186)
1a
1senA00
A:30-164
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Thioredoxin_7_1senA01 (A:39-120)
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Clans
(
)
(
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Families
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(
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)
(
)
Clan
:
Thioredoxin
(367)
Family
:
Thioredoxin_7
(4)
Homo sapiens (Human)
(2)
1a
Thioredoxin_7-1senA01
A:39-120
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Chain A
Asymmetric Unit 1
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