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1SED
Asym. Unit
Info
Asym.Unit (72 KB)
Biol.Unit 1 (66 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION YHAL FROM BACILLUS SUBTILIS
Authors
:
Y. Kim, A. Joachimiak, E. Evdokimova, A. Savchenko, A. Edwards, Midwes For Structural Genomics (Mcsg)
Date
:
17 Feb 04 (Deposition) - 25 May 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Structural Genomics, Hypothetical Protein, Yhai, Four Helix Bundle, Colied-Coil, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Kim, A. Joachimiak, E. Evdokimova, A. Savchenko, A. Edwards
The Crystal Structure Of The Hypothetical Protein Yhai, Apc1180 From Bacillus Subtilis
To Be Published
[
close entry info
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Hetero Components
(4, 29)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
2a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
2b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
2c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
2d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
2e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
2f: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDf)
2g: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDg)
2h: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDh)
2i: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDi)
2j: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDj)
2k: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDk)
2l: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDl)
2m: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDm)
2n: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDn)
2o: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDo)
2p: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDp)
2q: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDq)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
6
Ligand/Ion
GLYCEROL
2
MPD
17
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
3
NA
3
Ligand/Ion
SODIUM ION
4
ZN
3
Ligand/Ion
ZINC ION
[
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Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:52 , GLU A:55 , ASP C:107 , HIS C:111
BINDING SITE FOR RESIDUE ZN A 501
02
AC2
SOFTWARE
ASP A:107 , HIS A:111 , GLU B:52 , GLU B:55
BINDING SITE FOR RESIDUE ZN B 502
03
AC3
SOFTWARE
ASP B:107 , HIS B:111 , GLU C:52 , GLU C:55
BINDING SITE FOR RESIDUE ZN C 503
04
AC4
SOFTWARE
GLY A:77 , GOL A:801 , GOL A:802 , HOH A:875
BINDING SITE FOR RESIDUE NA A 504
05
AC5
SOFTWARE
GLY B:77 , GOL B:803 , GOL B:804 , HOH B:869
BINDING SITE FOR RESIDUE NA B 505
06
AC6
SOFTWARE
GLY C:77 , GOL C:805 , GOL C:806
BINDING SITE FOR RESIDUE NA C 506
07
AC7
SOFTWARE
ASP A:51 , HOH A:864 , HIS C:111 , HOH C:824
BINDING SITE FOR RESIDUE MPD A 701
08
AC8
SOFTWARE
ASP A:69 , ALA A:73 , MPD A:715
BINDING SITE FOR RESIDUE MPD A 702
09
AC9
SOFTWARE
VAL A:85 , MET A:109 , PHE A:112 , ASP A:113
BINDING SITE FOR RESIDUE MPD A 703
10
BC1
SOFTWARE
HIS A:111 , PHE A:112 , HOH A:856 , MET B:47 , ASP B:51 , HOH B:865
BINDING SITE FOR RESIDUE MPD B 704
11
BC2
SOFTWARE
ASP B:69 , PHE B:112
BINDING SITE FOR RESIDUE MPD B 705
12
BC3
SOFTWARE
ALA B:76 , VAL B:85 , HIS B:86 , PHE B:112 , ASP B:113
BINDING SITE FOR RESIDUE MPD B 706
13
BC4
SOFTWARE
ARG A:10 , GLN C:16 , ILE C:34
BINDING SITE FOR RESIDUE MPD C 707
14
BC5
SOFTWARE
HIS B:111 , PHE B:112 , HOH B:822 , MET C:47 , ASP C:51 , HOH C:820
BINDING SITE FOR RESIDUE MPD C 708
15
BC6
SOFTWARE
ALA C:76 , HIS C:86 , PHE C:112 , ASP C:113 , MPD C:710
BINDING SITE FOR RESIDUE MPD C 709
16
BC7
SOFTWARE
ASP C:69 , ALA C:73 , PHE C:112 , MPD C:709
BINDING SITE FOR RESIDUE MPD C 710
17
BC8
SOFTWARE
LYS B:61 , HOH B:830 , GLU C:56 , HOH C:880
BINDING SITE FOR RESIDUE MPD C 711
18
BC9
SOFTWARE
GLU A:56 , HOH A:862 , VAL C:66 , HOH C:833
BINDING SITE FOR RESIDUE MPD A 712
19
CC1
SOFTWARE
GLN B:16 , ILE B:34 , ASP B:35 , ARG C:10
BINDING SITE FOR RESIDUE MPD B 713
20
CC2
SOFTWARE
LYS A:70 , LYS C:61 , ALA C:62 , GLY C:64
BINDING SITE FOR RESIDUE MPD A 714
21
CC3
SOFTWARE
ASP A:69 , LYS A:70 , ALA A:73 , MPD A:702
BINDING SITE FOR RESIDUE MPD A 715
22
CC4
SOFTWARE
LYS A:61 , ALA A:62 , GLN A:63 , GLY A:64 , LYS B:70
BINDING SITE FOR RESIDUE MPD B 716
23
CC5
SOFTWARE
LYS B:61 , ALA B:62 , GLY B:64 , LYS C:70 , LEU C:74
BINDING SITE FOR RESIDUE MPD C 717
24
CC6
SOFTWARE
ALA A:76 , GLY A:77 , LEU A:79 , NA A:504 , HOH A:874
BINDING SITE FOR RESIDUE GOL A 801
25
CC7
SOFTWARE
GLY A:77 , GLN A:78 , NA A:504 , HOH A:874 , HOH A:875 , GLN C:63 , GLY C:64 , PHE C:65
BINDING SITE FOR RESIDUE GOL A 802
26
CC8
SOFTWARE
ALA B:76 , GLY B:77 , LEU B:79 , NA B:505 , GOL B:804 , HOH B:882
BINDING SITE FOR RESIDUE GOL B 803
27
CC9
SOFTWARE
GLN A:63 , GLY A:64 , PHE A:65 , GLY B:77 , NA B:505 , GOL B:803 , HOH B:880 , HOH B:882
BINDING SITE FOR RESIDUE GOL B 804
28
DC1
SOFTWARE
ALA C:76 , GLY C:77 , LEU C:79 , GLU C:81 , NA C:506 , HOH C:808 , HOH C:822
BINDING SITE FOR RESIDUE GOL C 805
29
DC2
SOFTWARE
GLN B:63 , GLY B:64 , PHE B:65 , GLY C:77 , GLN C:78 , NA C:506 , HOH C:807 , HOH C:822
BINDING SITE FOR RESIDUE GOL C 806
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1seda_ (A:)
1b: SCOP_d1sedb_ (B:)
1c: SCOP_d1sedc_ (C:)
View:
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Classes
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Protein Domains
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(
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Organisms
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(
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Class
:
All alpha proteins
(14657)
Fold
:
Hypothetical protein YhaI
(1)
Superfamily
:
Hypothetical protein YhaI
(1)
Family
:
Hypothetical protein YhaI
(1)
Protein domain
:
Hypothetical protein YhaI
(1)
Bacillus subtilis [TaxId: 1423]
(1)
1a
d1seda_
A:
1b
d1sedb_
B:
1c
d1sedc_
C:
[
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1sedA00 (A:2-113)
1b: CATH_1sedC00 (C:2-113)
1c: CATH_1sedB00 (B:4-113)
View:
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Hypothetical protein YhaI fold
(1)
Homologous Superfamily
:
Hypothetical protein YhaI like domains
(1)
Bacillus subtilis. Organism_taxid: 1423.
(1)
1a
1sedA00
A:2-113
1b
1sedC00
C:2-113
1c
1sedB00
B:4-113
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein & NOT PROSITE
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