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1SDS
Asym. Unit
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Asym.Unit (82 KB)
Biol.Unit 1 (76 KB)
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(1)
Title
:
STRUCTURE OF PROTEIN L7AE BOUND TO A K-TURN DERIVED FROM AN ARCHAEAL BOX H/ACA SRNA
Authors
:
T. Hamma, A. Ferre-D'Amare
Date
:
13 Feb 04 (Deposition) - 18 May 04 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Protein-Rna Complex, Protein-Rna Complex Complex
(Keyword Search:
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Reference
:
T. Hamma, A. Ferre-D'Amare
Structure Of Protein L7Ae Bound To A K-Turn Derived From An Archaeal Box H/Aca Srna At 1. 8 A Resolution.
Structure V. 12 893 2004
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Hetero Components
(2, 11)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
2a: POTASSIUM ION (Ka)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
10
Ligand/Ion
CALCIUM ION
2
K
1
Ligand/Ion
POTASSIUM ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
U F:206 , G F:208 , HOH F:874 , HOH F:953 , HOH F:995 , HOH F:1023 , HOH F:1024
BINDING SITE FOR RESIDUE CA F 751
02
AC2
SOFTWARE
U E:206 , G E:208 , HOH E:899 , HOH E:1013 , HOH E:1020 , HOH E:1026
BINDING SITE FOR RESIDUE CA E 752
03
AC3
SOFTWARE
A F:205 , U F:206 , U F:207 , G F:208 , HOH F:979
BINDING SITE FOR RESIDUE CA F 753
04
AC4
SOFTWARE
A E:205 , U E:206 , U E:207 , G E:208 , HOH E:975
BINDING SITE FOR RESIDUE CA E 754
05
AC5
SOFTWARE
U D:206 , G D:208 , HOH D:886 , HOH D:986 , HOH D:987 , HOH D:1030
BINDING SITE FOR RESIDUE CA D 755
06
AC6
SOFTWARE
A D:205 , U D:206 , U D:207 , G D:208 , HOH D:987 , HOH D:1033 , HOH E:994
BINDING SITE FOR RESIDUE CA D 756
07
AC7
SOFTWARE
A D:212 , HOH D:852 , HOH D:910 , HOH D:956 , HOH D:957 , HOH D:1036
BINDING SITE FOR RESIDUE CA D 757
08
AC8
SOFTWARE
A F:212 , HOH F:851 , HOH F:885 , HOH F:1007 , HOH F:1021
BINDING SITE FOR RESIDUE CA F 758
09
AC9
SOFTWARE
HOH E:1039
BINDING SITE FOR RESIDUE CA E 759
10
BC1
SOFTWARE
HOH F:1040 , HOH F:1041 , HOH F:1042 , HOH F:1043 , HOH F:1078
BINDING SITE FOR RESIDUE CA F 760
11
BC2
SOFTWARE
G E:213
BINDING SITE FOR RESIDUE K E 761
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: RIBOSOMAL_L7AE (A:65-82,B:65-82,C:65-82)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RIBOSOMAL_L7AE
PS01082
Ribosomal protein L7Ae signature.
RL7A_METJA
65-82
3
A:65-82
B:65-82
C:65-82
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1sdsa_ (A:)
1b: SCOP_d1sdsb_ (B:)
1c: SCOP_d1sdsc_ (C:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Bacillus chorismate mutase-like
(324)
Superfamily
:
L30e-like
(93)
Family
:
L30e/L7ae ribosomal proteins
(84)
Protein domain
:
Ribosomal protein L7ae
(67)
Methanococcus jannaschii [TaxId: 2190]
(3)
1a
d1sdsa_
A:
1b
d1sdsb_
B:
1c
d1sdsc_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1sdsC00 (C:5-116)
1b: CATH_1sdsA00 (A:2-116)
1c: CATH_1sdsB00 (B:7-115)
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Organisms
(
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
60s Ribosomal Protein L30; Chain: A;
(235)
Homologous Superfamily
:
[code=3.30.1330.30, no name defined]
(102)
[unclassified]
(5)
1a
1sdsC00
C:5-116
1b
1sdsA00
A:2-116
1c
1sdsB00
B:7-115
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Pfam Domains
(0, 0)
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