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1SDD
Asym. Unit
Info
Asym.Unit (156 KB)
Biol.Unit 1 (149 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BOVINE FACTOR VAI
Authors
:
T. E. Adams, M. F. Hockin, K. G. Mann, S. J. Everse
Date
:
13 Feb 04 (Deposition) - 29 Jun 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Coagulation, Copper-Binding Protein, Cofactor, Blood Clotting
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
T. E. Adams, M. F. Hockin, K. G. Mann, S. J. Everse
The Crystal Structure Of Activated Protein C-Inactivated Bovine Factor Va: Implications For Cofactor Function.
Proc. Natl. Acad. Sci. Usa V. 101 8918 2004
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Hetero Components
(4, 7)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: COPPER (II) ION (CUa)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
4b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
CU
1
Ligand/Ion
COPPER (II) ION
3
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
NDG
2
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:197 , GLN A:198 , HOH A:2305
BINDING SITE FOR RESIDUE NAG A 2185
2
AC2
SOFTWARE
TYR A:44 , GLN A:46 , VAL A:210 , ASN A:211 , GLN A:289 , ALA A:290 , HOH A:2269
BINDING SITE FOR RESIDUE NAG A 2186
3
AC3
SOFTWARE
PRO B:1661 , ASN B:1662
BINDING SITE FOR RESIDUE NDG B 2187
4
AC4
SOFTWARE
PRO B:1680 , GLY B:1681 , SER B:1682 , ARG B:1711 , TRP B:1784 , ASN B:1811 , GLU B:1832
BINDING SITE FOR RESIDUE NAG B 2188
5
AC5
SOFTWARE
MET B:1721 , ASN B:1969
BINDING SITE FOR RESIDUE NDG B 2189
6
AC6
SOFTWARE
HIS B:1802 , HIS B:1804 , ASP B:1844
BINDING SITE FOR RESIDUE CU B 2190
7
AC7
SOFTWARE
LYS A:93 , GLU A:108 , ASP A:111 , ASP A:112
BINDING SITE FOR RESIDUE CA A 2184
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(4, 8)
Info
All PROSITE Patterns/Profiles
1: MULTICOPPER_OXIDASE1 (A:276-296|B:1839-1859)
2: FA58C_3 (B:1866-2020|B:2025-2180)
3: FA58C_1 (B:1906-1939|B:2070-2099)
4: FA58C_2 (B:2004-2020|B:2164-2180)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MULTICOPPER_OXIDASE1
PS00079
Multicopper oxidases signature 1.
FA5_BOVIN
304-324
1867-1887
2
A:276-296
B:1839-1859
2
FA58C_3
PS50022
Coagulation factors 5/8 type C domain (FA58C) profile.
FA5_BOVIN
1894-2048
2053-2208
2
B:1866-2020
B:2025-2180
3
FA58C_1
PS01285
Coagulation factors 5/8 type C domain (FA58C) signature 1.
FA5_BOVIN
1934-1967
2098-2127
2
B:1906-1939
B:2070-2099
4
FA58C_2
PS01286
Coagulation factors 5/8 type C domain (FA58C) signature 2.
FA5_BOVIN
2032-2048
2192-2208
2
B:2004-2020
B:2164-2180
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1sdda1 (A:1-180)
1b: SCOP_d1sdda2 (A:181-296)
1c: SCOP_d1sddb1 (B:1657-1723)
1d: SCOP_d1sddb2 (B:1724-1862)
2a: SCOP_d1sddb3 (B:1863-2024)
2b: SCOP_d1sddb4 (B:2025-2182)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Multidomain cupredoxins
(146)
Protein domain
:
Coagulation factor V
(1)
Cow (Bos taurus) [TaxId: 9913]
(1)
1a
d1sdda1
A:1-180
1b
d1sdda2
A:181-296
1c
d1sddb1
B:1657-1723
1d
d1sddb2
B:1724-1862
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain)
(17)
Protein domain
:
C2 domain of factor V
(4)
Cow (Bos taurus) [TaxId: 9913]
(1)
2a
d1sddb3
B:1863-2024
2b
d1sddb4
B:2025-2182
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1sddB01 (B:1538-1722)
1b: CATH_1sddA01 (A:1-181)
1c: CATH_1sddB02 (B:1723-1862)
1d: CATH_1sddA02 (A:182-296)
2a: CATH_1sddB03 (B:1863-2023)
2b: CATH_1sddB04 (B:2024-2182)
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Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
Cattle (Bos taurus)
(16)
1a
1sddB01
B:1538-1722
1b
1sddA01
A:1-181
1c
1sddB02
B:1723-1862
1d
1sddA02
A:182-296
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Galactose-binding domain-like
(195)
Cattle (Bos taurus)
(3)
2a
1sddB03
B:1863-2023
2b
1sddB04
B:2024-2182
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Cu_oxidase_3_1sddB01 (B:1599-1713)
1b: PFAM_Cu_oxidase_3_1sddB02 (B:1599-1713)
2a: PFAM_F5_F8_type_C_1sddB03 (B:2040-2177)
2b: PFAM_F5_F8_type_C_1sddB04 (B:2040-2177)
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Clans
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Organisms
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)
Clan
:
CU_oxidase
(192)
Family
:
Cu-oxidase_3
(79)
Bos taurus (Bovine)
(1)
1a
Cu-oxidase_3-1sddB01
B:1599-1713
1b
Cu-oxidase_3-1sddB02
B:1599-1713
Clan
:
GBD
(153)
Family
:
F5_F8_type_C
(45)
Bos taurus (Bovine)
(2)
2a
F5_F8_type_C-1sddB03
B:2040-2177
2b
F5_F8_type_C-1sddB04
B:2040-2177
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Asymmetric Unit 1
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