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1SCH
Biol. Unit 2
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Asym.Unit (91 KB)
Biol.Unit 1 (45 KB)
Biol.Unit 2 (44 KB)
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(1)
Title
:
PEANUT PEROXIDASE
Authors
:
D. J. Schuller, T. L. Poulos
Date
:
23 Jan 96 (Deposition) - 11 Jul 96 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.56
Chains
:
Asym. Unit : A,B
Biol. Unit 1: B (1x)
Biol. Unit 2: A (1x)
Keywords
:
Calcium Binding, Glycosylation, Peroxidase, Oxidoreductase
(Keyword Search:
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Reference
:
D. J. Schuller, N. Ban, R. B. Huystee, A. Mcpherson, T. L. Poulos
The Crystal Structure Of Peanut Peroxidase.
Structure V. 4 311 1996
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4a: PYROGLUTAMIC ACID (PCAa)
4b: PYROGLUTAMIC ACID (PCAb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
NAG
-1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
PCA
1
Mod. Amino Acid
PYROGLUTAMIC ACID
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Sites
(7, 7)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC6 (SOFTWARE)
4: ADC (UNKNOWN)
5: ADH (UNKNOWN)
6: APC (UNKNOWN)
7: APH (UNKNOWN)
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
THR A:170 , ASP A:214 , THR A:217 , LYS A:220 , ASP A:222
BINDING SITE FOR RESIDUE CA A 301
2
AC3
SOFTWARE
ASP A:43 , VAL A:46 , GLY A:48 , ASP A:50 , SER A:52 , HOH A:428
BINDING SITE FOR RESIDUE CA A 302
3
AC6
SOFTWARE
ARG A:31 , ALA A:34 , SER A:35 , ARG A:38 , PHE A:41 , SER A:73 , ALA A:140 , LEU A:148 , PHE A:152 , LEU A:165 , ALA A:168 , HIS A:169 , GLY A:172 , GLN A:173 , ALA A:174 , GLN A:175 , ALA A:178 , PHE A:213 , SER A:238 , MET A:270 , HOH A:451 , HOH A:456
BINDING SITE FOR RESIDUE HEM A 300
4
ADC
UNKNOWN
ASP A:43 , VAL A:46 , GLY A:48 , ASP A:50 , SER A:52 , GLU A:64
DISTAL CATION SITE THROUGH SOLVENT.
5
ADH
UNKNOWN
HIS A:42 , ARG A:38 , PHE A:41 , ASN A:70
DISTAL HEME POCKET.
6
APC
UNKNOWN
THR A:170 , ASP A:214 , THR A:217 , LYS A:220 , ASP A:222
PROXIMAL CATION SITE.
7
APH
UNKNOWN
HIS A:169 , PHE A:213 , ASP A:239
PROXIMAL HEME POCKET.
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: PEROXIDASE_4 (A:2-294)
2: PEROXIDASE_2 (A:33-44)
3: PEROXIDASE_1 (A:161-171)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_4
PS50873
Plant heme peroxidase family profile.
PER1_ARAHY
23-316
1
A:2-294
-
2
PEROXIDASE_2
PS00436
Peroxidases active site signature.
PER1_ARAHY
55-66
1
A:33-44
-
3
PEROXIDASE_1
PS00435
Peroxidases proximal heme-ligand signature.
PER1_ARAHY
183-193
1
A:161-171
-
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1scha_ (A:)
1b: SCOP_d1schb_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
Heme-dependent peroxidases
(402)
Superfamily
:
Heme-dependent peroxidases
(402)
Family
:
CCP-like
(292)
Protein domain
:
Plant peroxidase
(35)
Peanut (Arachis hypogaea) [TaxId: 3818]
(1)
1a
d1scha_
A:
1b
d1schb_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1schA01 (A:2-138,A:274-294)
1b: CATH_1schB01 (B:2-138,B:274-294)
2a: CATH_1schA02 (A:139-273)
2b: CATH_1schB02 (B:139-273)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Peroxidase; domain 1
(244)
Homologous Superfamily
:
[code=1.10.520.10, no name defined]
(241)
Peanut (Arachis hypogaea)
(1)
1a
1schA01
A:2-138,A:274-294
1b
1schB01
B:2-138,B:274-294
Topology
:
Peroxidase; domain 2
(241)
Homologous Superfamily
:
Peroxidase, domain 2
(241)
Peanut (Arachis hypogaea)
(1)
2a
1schA02
A:139-273
2b
1schB02
B:139-273
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_peroxidase_1schB01 (B:18-258)
1b: PFAM_peroxidase_1schB02 (B:18-258)
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Clan
:
no clan defined [family: peroxidase]
(92)
Family
:
peroxidase
(92)
Arachis hypogaea (Peanut)
(1)
1a
peroxidase-1schB01
B:18-258
1b
peroxidase-1schB02
B:18-258
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Asymmetric Unit 1
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