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1SBY
Asym. Unit
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Asym.Unit (205 KB)
Biol.Unit 1 (201 KB)
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(1)
Title
:
ALCOHOL DEHYDROGENASE FROM DROSOPHILA LEBANONENSIS COMPLEXED WITH NAD+ AND 2,2,2-TRIFLUOROETHANOL AT 1.1 A RESOLUTION
Authors
:
J. Benach, R. Meijers, S. Atrian, R. Gonzalez-Duarte, V. S. Lamzin, R. Ladenstein
Date
:
11 Feb 04 (Deposition) - 22 Feb 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Alcohol Dehydrogenase, Ternary Complex, Nad, Trifluoroethanol, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Benach, R. Meijers, S. Atrian, R. Gonzalez-Duarte, V. S. Lamzin, R. Ladenstein
1. 1-A Crystal Structure Of D. Lebanonensis Adh Complexed With Nad+ And 2, 2, 2-Trifluoroethanol
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: TRIFLUOROETHANOL (ETFa)
1b: TRIFLUOROETHANOL (ETFb)
2a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
2b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ETF
2
Ligand/Ion
TRIFLUOROETHANOL
2
NAD
2
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:12 , GLY A:15 , GLY A:16 , ILE A:17 , ASP A:37 , TYR A:62 , ASP A:63 , VAL A:64 , GLY A:91 , ALA A:92 , GLY A:93 , ILE A:106 , ILE A:136 , CYS A:137 , SER A:138 , TYR A:151 , LYS A:155 , PRO A:181 , GLY A:182 , ILE A:183 , THR A:184 , THR A:186 , LEU A:188 , ETF A:1256 , HOH A:1294 , HOH A:1302 , HOH A:1363 , HOH A:1403 , HOH A:1486 , HOH A:1507 , HOH A:1568
BINDING SITE FOR RESIDUE NAD A 1255
2
AC2
SOFTWARE
LEU A:95 , SER A:138 , THR A:140 , TYR A:151 , ILE A:183 , LEU A:188 , VAL A:189 , NAD A:1255
BINDING SITE FOR RESIDUE ETF A 1256
3
AC3
SOFTWARE
ALA B:12 , GLY B:15 , GLY B:16 , ILE B:17 , ASP B:37 , ARG B:38 , TYR B:62 , ASP B:63 , VAL B:64 , GLY B:91 , ALA B:92 , GLY B:93 , ILE B:106 , ILE B:136 , CYS B:137 , SER B:138 , TYR B:151 , LYS B:155 , PRO B:181 , GLY B:182 , ILE B:183 , THR B:184 , THR B:186 , PRO B:187 , LEU B:188 , ETF B:2256 , HOH B:2362 , HOH B:2389 , HOH B:2405 , HOH B:2474
BINDING SITE FOR RESIDUE NAD B 2255
4
AC4
SOFTWARE
LEU B:95 , SER B:138 , THR B:140 , ILE B:145 , TYR B:151 , ILE B:183 , LEU B:188 , VAL B:189 , NAD B:2255
BINDING SITE FOR RESIDUE ETF B 2256
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ADH_SHORT (A:138-166,B:138-166)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_SHORT
PS00061
Short-chain dehydrogenases/reductases family signature.
ADH_DROLE
138-166
2
A:138-166
B:138-166
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1sbya_ (A:)
1b: SCOP_d1sbyb_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
Drosophila alcohol dehydrogenase
(9)
Fly (Drosophila lebanonensis) [TaxId: 7225]
(8)
1a
d1sbya_
A:
1b
d1sbyb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1sbyA00 (A:1-254)
1b: CATH_1sbyB00 (B:1-254)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Scaptodrosophila lebanonensis. Organism_taxid: 7225
(6)
1a
1sbyA00
A:1-254
1b
1sbyB00
B:1-254
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_adh_short_1sbyB01 (B:6-169)
1b: PFAM_adh_short_1sbyB02 (B:6-169)
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Clan
:
NADP_Rossmann
(1239)
Family
:
adh_short
(92)
Drosophila lebanonensis (Fruit fly) (Scaptodrosophila lebanonensis)
(1)
1a
adh_short-1sbyB01
B:6-169
1b
adh_short-1sbyB02
B:6-169
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Asymmetric Unit 1
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