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1SBG
Asym. Unit
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Asym.Unit (36 KB)
Biol.Unit 1 (33 KB)
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(1)
Title
:
AN ORALLY-BIOAVAILABLE HIV-1 PROTEASE INHIBITOR CONTAINING AN IMIDAZOLE-DERIVED PEPTIDE BOND REPLACEMENT. CRYSTALLOGRAPHIC AND PHARMACOKINETIC ANALYSIS
Authors
:
S. Abdel-Meguid, B. Zhao
Date
:
24 May 94 (Deposition) - 15 Oct 94 (Release) - 22 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Hydrolase(Acid Protease)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. S. Abdel-Meguid, B. W. Metcalf, T. J. Carr, P. Demarsh, R. L. Desjarlais, S. Fisher, D. W. Green, L. Ivanoff, D. M. Lambert, K. H. M. Murthy, S. R. Petteway Jr. , W. J. Pitts, T. A. Tomaszek Jr. , E. Winborne, B. Zhao, G. B. Dreyer, T. D. Meek
An Orally Bioavailable Hiv-1 Protease Inhibitor Containing An Imidazole-Derived Peptide Bond Replacement: Crystallographic And Pharmacokinetic Analysis.
Biochemistry V. 33 11671 1994
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Hetero Components
(1, 1)
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All Hetero Components
1a: (2R,4S,5S,1'S)-2-PHENYLMETHYL-4-HY... (IM1a)
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No.
Name
Count
Type
Full Name
1
IM1
1
Ligand/Ion
(2R,4S,5S,1'S)-2-PHENYLMETHYL-4-HYDROXY-5-(TERT-BUTOXYCARBONYL)AMINO-6-PHENYL HEXANOYL-N-(1'-IMIDAZO-2-YL)-2'-METHYLPROPANAMIDE
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Sites
(1, 1)
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1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:25 , GLY A:27 , ALA A:28 , GLY A:49 , HOH A:500 , ASP B:25 , GLY B:27 , ALA B:28 , ASP B:29 , ASP B:30 , GLY B:48 , GLY B:49 , PRO B:81 , VAL B:82
BINDING SITE FOR RESIDUE IM1 A 400
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(2, 4)
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1: ASP_PROT_RETROV (A:20-89,B:20-89)
2: ASP_PROTEASE (A:22-33,B:22-33)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ASP_PROT_RETROV
PS50175
Aspartyl protease, retroviral-type family profile.
POL_HV1B1
520-589
2
A:20-89
B:20-89
2
ASP_PROTEASE
PS00141
Eukaryotic and viral aspartyl proteases active site.
POL_HV1B1
522-533
2
A:22-33
B:22-33
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Exons
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SCOP Domains
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1a: SCOP_d1sbga_ (A:)
1b: SCOP_d1sbgb_ (B:)
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Class
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All beta proteins
(24004)
Fold
:
Acid proteases
(1120)
Superfamily
:
Acid proteases
(1120)
Family
:
Retroviral protease (retropepsin)
(591)
Protein domain
:
Human immunodeficiency virus type 1 protease
(514)
Human immunodeficiency virus type 1 [TaxId: 11676]
(424)
1a
d1sbga_
A:
1b
d1sbgb_
B:
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CATH Domains
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all CATH domains
1a: CATH_1sbgA00 (A:1-99)
1b: CATH_1sbgB00 (B:1-99)
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Class
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Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Cathepsin D, subunit A; domain 1
(745)
Homologous Superfamily
:
Acid Proteases
(745)
Human immunodeficiency virus type 1 bh10. Organism_taxid: 11678.
(1)
1a
1sbgA00
A:1-99
1b
1sbgB00
B:1-99
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Pfam Domains
(1, 2)
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all PFAM domains
1a: PFAM_RVP_1sbgB01 (B:4-98)
1b: PFAM_RVP_1sbgB02 (B:4-98)
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Clan
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Peptidase_AA
(368)
Family
:
RVP
(212)
Human immunodeficiency virus type 1 group M subtype B (isolate BH10) (HIV-1)
(27)
1a
RVP-1sbgB01
B:4-98
1b
RVP-1sbgB02
B:4-98
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Asym.Unit (36 KB)
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