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1SA0
Asym. Unit
Info
Asym.Unit (258 KB)
Biol.Unit 1 (245 KB)
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Title
:
TUBULIN-COLCHICINE: STATHMIN-LIKE DOMAIN COMPLEX
Authors
:
R. B. Ravelli, B. Gigant, P. A. Curmi, I. Jourdain, S. Lachkar, A. Sobel, M. Knossow
Date
:
06 Feb 04 (Deposition) - 23 Mar 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.58
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Keywords
:
Alpha-Tubulin, Beta-Tubulin, Colchicine, Gtpase, Microtubule Podophyllotoxin, Stathmin, Tubulin, Cell Cycle
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. B. Ravelli, B. Gigant, P. A. Curmi, I. Jourdain, S. Lachkar, A. Sobel, M. Knossow
Insight Into Tubulin Regulation From A Complex With Colchicine And A Stathmin-Like Domain.
Nature V. 428 198 2004
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 9)
Info
All Hetero Components
1a: 2-MERCAPTO-N-[1,2,3,10-TETRAMETHOX... (CN2a)
1b: 2-MERCAPTO-N-[1,2,3,10-TETRAMETHOX... (CN2b)
2a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
2b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
3a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
3b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CN2
2
Ligand/Ion
2-MERCAPTO-N-[1,2,3,10-TETRAMETHOXY-9-OXO-5,6,7,9-TETRAHYDRO-BENZO[A]HEPTALEN-7-YL]ACETAMIDE
2
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
3
GTP
2
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
4
MG
3
Ligand/Ion
MAGNESIUM ION
[
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:98 , ALA A:99 , GLY A:144 , THR A:145 , GTP A:600
BINDING SITE FOR RESIDUE MG A 501
2
AC2
SOFTWARE
ASN B:101 , GDP B:602
BINDING SITE FOR RESIDUE MG B 502
3
AC3
SOFTWARE
ASP C:98 , ALA C:99 , GLY C:144 , THR C:145 , GTP C:601
BINDING SITE FOR RESIDUE MG C 503
4
AC4
SOFTWARE
GLY A:10 , GLN A:11 , ALA A:12 , GLN A:15 , ASP A:69 , GLU A:71 , ASP A:98 , ALA A:99 , SER A:140 , GLY A:143 , GLY A:144 , THR A:145 , GLY A:146 , PRO A:173 , VAL A:177 , SER A:178 , GLU A:183 , ASN A:206 , TYR A:224 , ASN A:228 , MG A:501 , LYS B:254
BINDING SITE FOR RESIDUE GTP A 600
5
AC5
SOFTWARE
GLY C:10 , GLN C:11 , ALA C:12 , GLN C:15 , ILE C:16 , ASP C:69 , GLU C:71 , ASP C:98 , SER C:140 , GLY C:142 , GLY C:143 , GLY C:144 , THR C:145 , GLY C:146 , PRO C:173 , VAL C:177 , SER C:178 , GLU C:183 , ASN C:206 , TYR C:224 , ASN C:228 , ILE C:231 , MG C:503 , LYS D:254
BINDING SITE FOR RESIDUE GTP C 601
6
AC6
SOFTWARE
GLY B:10 , GLN B:11 , CYS B:12 , ASN B:101 , SER B:140 , GLY B:142 , GLY B:144 , THR B:145 , GLY B:146 , VAL B:177 , ASP B:179 , GLU B:183 , ASN B:206 , TYR B:224 , ASN B:228 , MG B:502
BINDING SITE FOR RESIDUE GDP B 602
7
AC7
SOFTWARE
GLY D:10 , GLN D:11 , CYS D:12 , ASN D:101 , SER D:140 , GLY D:142 , GLY D:144 , THR D:145 , GLY D:146 , VAL D:177 , ASP D:179 , GLU D:183 , ASN D:206 , TYR D:224 , ASN D:228
BINDING SITE FOR RESIDUE GDP D 603
8
AC8
SOFTWARE
SER A:178 , THR A:179 , VAL A:181 , VAL B:238 , CYS B:241 , ALA B:250 , LEU B:255 , ASN B:258 , MET B:259 , VAL B:315 , ALA B:316 , LYS B:352
BINDING SITE FOR RESIDUE CN2 B 700
9
AC9
SOFTWARE
SER C:178 , ALA C:180 , VAL C:181 , CYS D:241 , ALA D:250 , LEU D:255 , ASN D:258 , MET D:259 , VAL D:315 , ALA D:316 , LYS D:352 , ILE D:378
BINDING SITE FOR RESIDUE CN2 D 701
[
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]
SAPs(SNPs)/Variants
(6, 12)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_TBB_PIG_001 (H37V, chain B/D, )
2: VAR_TBB_PIG_002 (N50S, chain B/D, )
3: VAR_TBA1A_PIG_001 (I265G, chain A/C, )
4: VAR_TBA1A_PIG_002 (I265I, chain A/C, )
5: VAR_TBA1A_PIG_003 (H266I, chain A/C, )
6: VAR_TBB_PIG_003 (S277A, chain B/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_TBB_PIG_001
*
H
37
V
TBB_PIG
---
---
B/D
H
37
V
2
UniProt
VAR_TBB_PIG_002
*
N
48
S
TBB_PIG
---
---
B/D
N
50
S
3
UniProt
VAR_TBA1A_PIG_001
*
A
265
G
TBA1A_PIG
---
---
A/C
I
265
G
4
UniProt
VAR_TBA1A_PIG_002
*
A
265
I
TBA1A_PIG
---
---
A/C
I
265
I
5
UniProt
VAR_TBA1A_PIG_003
*
H
266
I
TBA1A_PIG
---
---
A/C
H
266
I
6
UniProt
VAR_TBB_PIG_003
*
S
275
A
TBB_PIG
---
---
B/D
S
277
A
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(4, 7)
Info
All PROSITE Patterns/Profiles
1: STATHMIN_3 (E:5-141)
2: STATHMIN_1 (E:45-49)
3: STATHMIN_2 (E:73-82)
4: TUBULIN (B:142-148,D:142-148,B:142-148,D:14...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
STATHMIN_3
PS51663
Stathmin-like (SLD) domain profile.
STMN4_RAT
48-189
1
E:5-141
2
STATHMIN_1
PS00563
Stathmin family signature 1.
STMN4_RAT
84-93
1
E:45-49
3
STATHMIN_2
PS01041
Stathmin family signature 2.
STMN4_RAT
117-126
1
E:73-82
4
TUBULIN
PS00227
Tubulin subunits alpha, beta, and gamma signature.
TBB2B_BOVIN
140-146
2
B:142-148
D:142-148
TBB_PIG
140-146
2
B:142-148
D:142-148
TBA1A_PIG
142-148
2
A:142-148
C:142-148
TBA1D_BOVIN
142-148
2
A:142-148
C:142-148
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(5, 9)
Info
All SCOP Domains
1a: SCOP_d1sa0e_ (E:)
2a: SCOP_d1sa0a2 (A:246-437)
2b: SCOP_d1sa0c2 (C:246-437)
3a: SCOP_d1sa0b2 (B:246-438)
3b: SCOP_d1sa0d2 (D:246-438)
4a: SCOP_d1sa0a1 (A:2-245)
4b: SCOP_d1sa0c1 (C:2-245)
5a: SCOP_d1sa0b1 (B:2-245)
5b: SCOP_d1sa0d1 (D:2-245)
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)
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)
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)
(
)
Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Non-globular all-alpha subunits of globular proteins
(135)
Superfamily
:
Stathmin
(21)
Family
:
Stathmin
(21)
Protein domain
:
Stathmin 4
(21)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(21)
1a
d1sa0e_
E:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Bacillus chorismate mutase-like
(324)
Superfamily
:
Tubulin C-terminal domain-like
(76)
Family
:
Tubulin, C-terminal domain
(69)
Protein domain
:
Tubulin alpha-subunit
(10)
Cow (Bos taurus) [TaxId: 9913]
(5)
2a
d1sa0a2
A:246-437
2b
d1sa0c2
C:246-437
Protein domain
:
Tubulin beta-subunit
(8)
Cow (Bos taurus) [TaxId: 9913]
(5)
3a
d1sa0b2
B:246-438
3b
d1sa0d2
D:246-438
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Tubulin nucleotide-binding domain-like
(75)
Superfamily
:
Tubulin nucleotide-binding domain-like
(75)
Family
:
Tubulin, GTPase domain
(69)
Protein domain
:
Tubulin alpha-subunit
(9)
Cow (Bos taurus) [TaxId: 9913]
(4)
4a
d1sa0a1
A:2-245
4b
d1sa0c1
C:2-245
Protein domain
:
Tubulin beta-subunit
(8)
Cow (Bos taurus) [TaxId: 9913]
(5)
5a
d1sa0b1
B:2-245
5b
d1sa0d1
D:2-245
[
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]
CATH Domains
(3, 12)
Info
all CATH domains
1a: CATH_1sa0B02 (B:262-383)
1b: CATH_1sa0D02 (D:262-383)
1c: CATH_1sa0C02 (C:269-383)
1d: CATH_1sa0A02 (A:269-383)
2a: CATH_1sa0C01 (C:2-268)
2b: CATH_1sa0A01 (A:2-268)
2c: CATH_1sa0B01 (B:2-261)
2d: CATH_1sa0D01 (D:2-261)
3a: CATH_1sa0A03 (A:384-437)
3b: CATH_1sa0C03 (C:384-437)
3c: CATH_1sa0B03 (B:384-438)
3d: CATH_1sa0D03 (D:384-438)
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)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
60s Ribosomal Protein L30; Chain: A;
(235)
Homologous Superfamily
:
[code=3.30.1330.20, no name defined]
(18)
Cattle (Bos taurus)
(4)
1a
1sa0B02
B:262-383
1b
1sa0D02
D:262-383
1c
1sa0C02
C:269-383
1d
1sa0A02
A:269-383
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1440, no name defined]
(23)
Cattle (Bos taurus)
(4)
2a
1sa0C01
C:2-268
2b
1sa0A01
A:2-268
2c
1sa0B01
B:2-261
2d
1sa0D01
D:2-261
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
Helix hairpin bin
(5)
Cattle (Bos taurus)
(4)
3a
1sa0A03
A:384-437
3b
1sa0C03
C:384-437
3c
1sa0B03
B:384-438
3d
1sa0D03
D:384-438
[
close CATH info
]
Pfam Domains
(3, 9)
Info
all PFAM domains
1a: PFAM_Tubulin_1sa0C01 (C:3-226)
1b: PFAM_Tubulin_1sa0C02 (C:3-226)
1c: PFAM_Tubulin_1sa0D01 (D:3-226)
1d: PFAM_Tubulin_1sa0D02 (D:3-226)
2a: PFAM_Tubulin_C_1sa0C03 (C:263-393)
2b: PFAM_Tubulin_C_1sa0C04 (C:263-393)
2c: PFAM_Tubulin_C_1sa0D03 (D:263-393)
2d: PFAM_Tubulin_C_1sa0D04 (D:263-393)
3a: PFAM_Stathmin_1sa0E01 (E:5-141)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Tubulin-like
(34)
Family
:
Tubulin
(34)
Bos taurus (Bovine)
(7)
1a
Tubulin-1sa0C01
C:3-226
1b
Tubulin-1sa0C02
C:3-226
1c
Tubulin-1sa0D01
D:3-226
1d
Tubulin-1sa0D02
D:3-226
Family
:
Tubulin_C
(11)
Bos taurus (Bovine)
(7)
2a
Tubulin_C-1sa0C03
C:263-393
2b
Tubulin_C-1sa0C04
C:263-393
2c
Tubulin_C-1sa0D03
D:263-393
2d
Tubulin_C-1sa0D04
D:263-393
Clan
:
no clan defined [family: Stathmin]
(4)
Family
:
Stathmin
(4)
Rattus norvegicus (Rat)
(4)
3a
Stathmin-1sa0E01
E:5-141
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Asym.Unit (258 KB)
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