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1S9K
Asym. Unit
Info
Asym.Unit (84 KB)
Biol.Unit 1 (80 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN NFAT1 AND FOS-JUN ON THE IL-2 ARRE1 SITE
Authors
:
D. Wang, J. C. Stroud, L. Chen
Date
:
04 Feb 04 (Deposition) - 14 Jun 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Keywords
:
Beta Barrel, Protein-Dna Complex, Double Helix, Ternary, Complex, B-Zip, Basic Leucine Zipper, Coiled Coil, Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Wang, J. C. Stroud, L. Chen
Crystal Structure Of Human Nfat1 And Fos-Jun On The Il-2 Arre1 Site
To Be Published
(for further references see the
PDB file header
)
[
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]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
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]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_012070 (T307M, chain E, )
2: VAR_051783 (H446R, chain C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_012070
T
297
M
JUN_HUMAN
Polymorphism
9989
E
T
307
M
2
UniProt
VAR_051783
H
446
R
NFAC2_HUMAN
Polymorphism
12479626
C
H
446
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: BZIP_BASIC (D:143-157,E:267-282)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BZIP_BASIC
PS00036
Basic-leucine zipper (bZIP) domain signature.
FOS_HUMAN
143-157
1
D:143-157
JUN_HUMAN
257-272
1
E:267-282
[
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]
Exons
(10, 10)
Info
All Exons
Exon 1.3 (D:140-167)
Exon 1.4 (D:168-192)
Exon 2.1 (E:267-318)
Exon 3.4 (C:399-444)
Exon 3.5 (C:445-512)
Exon 3.6 (C:512-570)
Exon 3.7 (C:570-617)
Exon 3.8 (C:617-635)
Exon 3.9 (C:636-678)
Exon 3.10 (C:678-678)
View:
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All Exon Boundaries
01: Boundary 1.2/1.3
02: Boundary 1.3/1.4
03: Boundary 1.4/-
04: Boundary -/2.1
05: Boundary 2.1/-
06: Boundary 3.3/3.4
07: Boundary 3.4/3.5
08: Boundary 3.5/3.6
09: Boundary 3.6/3.7
10: Boundary 3.7/3.8
11: Boundary 3.8/3.9
12: Boundary 3.9/3.10
13: Boundary 3.10/3.12c
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000303562
1
ENSE00001304961
chr14:
75745531-75745826
296
FOS_HUMAN
1-47
47
0
-
-
1.2
ENST00000303562
2
ENSE00001152033
chr14:
75746580-75746831
252
FOS_HUMAN
48-131
84
0
-
-
1.3
ENST00000303562
3
ENSE00001152027
chr14:
75747263-75747370
108
FOS_HUMAN
132-167
36
1
D:140-167
28
1.4
ENST00000303562
4
ENSE00001129865
chr14:
75747486-75748932
1447
FOS_HUMAN
168-380
213
1
D:168-192
25
2.1
ENST00000371222
1
ENSE00001454665
chr1:
59249785-59246465
3321
JUN_HUMAN
1-679
679
1
E:267-318
52
3.2
ENST00000396009
2
ENSE00001455518
chr20:
50159258-50158909
350
NFAC2_HUMAN
1-44
44
0
-
-
3.3
ENST00000396009
3
ENSE00000662713
chr20:
50140649-50139620
1030
NFAC2_HUMAN
44-387
344
0
-
-
3.4
ENST00000396009
4
ENSE00000662712
chr20:
50133494-50133323
172
NFAC2_HUMAN
387-444
58
1
C:399-444
46
3.5
ENST00000396009
5
ENSE00000662711
chr20:
50092197-50091995
203
NFAC2_HUMAN
445-512
68
1
C:445-512
68
3.6
ENST00000396009
6
ENSE00000662710
chr20:
50090689-50090517
173
NFAC2_HUMAN
512-570
59
1
C:512-570
59
3.7
ENST00000396009
7
ENSE00000662709
chr20:
50071225-50071085
141
NFAC2_HUMAN
570-617
48
1
C:570-617
48
3.8
ENST00000396009
8
ENSE00000662708
chr20:
50052298-50052243
56
NFAC2_HUMAN
617-635
19
1
C:617-635
19
3.9
ENST00000396009
9
ENSE00000662707
chr20:
50051851-50051725
127
NFAC2_HUMAN
636-678
43
1
C:636-678
43
3.10
ENST00000396009
10
ENSE00001455516
chr20:
50049293-50048604
690
NFAC2_HUMAN
678-908
231
1
C:678-678
1
3.12c
ENST00000396009
12c
ENSE00001955202
chr20:
50007988-50003494
4495
NFAC2_HUMAN
908-925
18
0
-
-
[
close EXON info
]
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d1s9kc2 (C:399-575)
2a: SCOP_d1s9kc1 (C:576-678)
3a: SCOP_d1s9kd1 (D:140-192)
4a: SCOP_d1s9ke1 (E:267-318)
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
p53-like transcription factors
(153)
Family
:
Rel/Dorsal transcription factors, DNA-binding domain
(34)
Protein domain
:
T-cell transcription factor NFAT1 (NFATC), DNA-binding domain
(9)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d1s9kc2
C:399-575
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
(56)
Protein domain
:
T-cell transcription factor NFAT1 (NFATC2)
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
2a
d1s9kc1
C:576-678
Class
:
Coiled coil proteins
(689)
Fold
:
Parallel coiled-coil
(407)
Superfamily
:
Leucine zipper domain
(105)
Family
:
Leucine zipper domain
(105)
Protein domain
:
C-fos
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
3a
d1s9kd1
D:140-192
Protein domain
:
C-jun
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
4a
d1s9ke1
E:267-318
[
close SCOP info
]
CATH Domains
(3, 4)
Info
all CATH domains
1a: CATH_1s9kE00 (E:267-318)
1b: CATH_1s9kD00 (D:140-192)
2a: CATH_1s9kC01 (C:399-569)
3a: CATH_1s9kC02 (C:570-678)
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)
Architectures
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.170, no name defined]
(60)
[unclassified]
(20)
1a
1s9kE00
E:267-318
1b
1s9kD00
D:140-192
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.340, no name defined]
(30)
[unclassified]
(23)
2a
1s9kC01
C:399-569
Homologous Superfamily
:
Immunoglobulins
(2282)
[unclassified]
(54)
3a
1s9kC02
C:570-678
[
close CATH info
]
Pfam Domains
(3, 4)
Info
all PFAM domains
1a: PFAM_TIG_1s9kC01 (C:582-675)
2a: PFAM_RHD_1s9kC02 (C:410-570)
3a: PFAM_bZIP_1_1s9kD01 (D:140-192)
3b: PFAM_bZIP_1_1s9kE01 (E:267-318)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
E-set
(290)
Family
:
TIG
(28)
Homo sapiens (Human)
(12)
1a
TIG-1s9kC01
C:582-675
Clan
:
P53-like
(54)
Family
:
RHD
(21)
Homo sapiens (Human)
(13)
2a
RHD-1s9kC02
C:410-570
Clan
:
bZIP
(54)
Family
:
bZIP_1
(51)
Homo sapiens (Human)
(5)
3a
bZIP_1-1s9kD01
D:140-192
3b
bZIP_1-1s9kE01
E:267-318
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