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1S9I
Asym. Unit
Info
Asym.Unit (105 KB)
Biol.Unit 1 (98 KB)
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(1)
Title
:
X-RAY STRUCTURE OF THE HUMAN MITOGEN-ACTIVATED PROTEIN KINASE KINASE 2 (MEK2)IN A COMPLEX WITH LIGAND AND MGATP
Authors
:
J. F. Ohren, H. Chen, A. Pavlovsky, C. Whitehead, C. Yan, P. Mcconnell, A. Delaney, D. T. Dudley, J. Sebolt-Leopold, C. A. Hasemann
Date
:
04 Feb 04 (Deposition) - 23 Nov 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Protein Kinase-Ligand-Mgatp Complex, Protein-Protein Interactions, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. F. Ohren, H. Chen, A. Pavlovsky, C. Whitehead, E. Zhang, P. Kuffa, C. Yan, P. Mcconnell, C. Spessard, C. Banotai, W. T. Mueller, A. Delaney, C. Omer, J. Sebolt-Leopold, D. T. Dudley, I. K. Leung, C. Flamme, J. Warmus, M. Kaufman, S. Barrett, H. Tecle, C. A. Hasemann
Structures Of Human Map Kinase Kinase 1 (Mek1) And Mek2 Describe Novel Noncompetitive Kinase Inhibition.
Nat. Struct. Mol. Biol. V. 11 1192 2004
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 6)
Info
All Hetero Components
1a: 5-{3,4-DIFLUORO-2-[(2-FLUORO-4-IOD... (5EAa)
1b: 5-{3,4-DIFLUORO-2-[(2-FLUORO-4-IOD... (5EAb)
2a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
2b: ADENOSINE-5'-TRIPHOSPHATE (ATPb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
5EA
2
Ligand/Ion
5-{3,4-DIFLUORO-2-[(2-FLUORO-4-IODOPHENYL)AMINO]PHENYL}-N-(2-MORPHOLIN-4-YLETHYL)-1,3,4-OXADIAZOL-2-AMINE
2
ATP
2
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
3
MG
2
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:199 , ASP A:212 , ATP A:535
BINDING SITE FOR RESIDUE MG A 536
2
AC2
SOFTWARE
ASN B:199 , ASP B:212 , ATP B:537
BINDING SITE FOR RESIDUE MG B 538
3
AC3
SOFTWARE
LEU A:78 , GLY A:81 , ASN A:82 , VAL A:86 , ALA A:99 , LYS A:101 , MET A:147 , GLU A:148 , MET A:150 , SER A:154 , GLN A:157 , ASP A:194 , LYS A:196 , SER A:198 , LEU A:201 , ASP A:212 , MG A:536 , 5EA A:1001
BINDING SITE FOR RESIDUE ATP A 535
4
AC4
SOFTWARE
LEU B:78 , GLY B:79 , GLY B:81 , ASN B:82 , GLY B:84 , ALA B:99 , LYS B:101 , MET B:147 , GLU B:148 , MET B:150 , SER B:154 , GLN B:157 , LYS B:196 , SER B:198 , ASN B:199 , LEU B:201 , ASP B:212 , MG B:538 , 5EA B:1002
BINDING SITE FOR RESIDUE ATP B 537
5
AC5
SOFTWARE
ASN A:82 , LYS A:101 , LEU A:119 , LEU A:122 , VAL A:131 , MET A:147 , ARG A:193 , ASP A:194 , ASP A:212 , PHE A:213 , GLY A:214 , VAL A:215 , SER A:216 , MET A:223 , ATP A:535
BINDING SITE FOR RESIDUE 5EA A 1001
6
AC6
SOFTWARE
LYS B:101 , LEU B:119 , LEU B:122 , VAL B:131 , ASP B:212 , PHE B:213 , GLY B:214 , VAL B:215 , SER B:216 , LEU B:219 , MET B:223 , ATP B:537
BINDING SITE FOR RESIDUE 5EA B 1002
[
close Site info
]
SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_069782 (P128Q, chain A/B, )
2: VAR_069783 (Y134H, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_069782
P
128
Q
MP2K2_HUMAN
Disease (CFC4)
---
A/B
P
128
Q
2
UniProt
VAR_069783
Y
134
H
MP2K2_HUMAN
Disease (CFC4)
---
A/B
Y
134
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:78-101,B:78-101)
2: PROTEIN_KINASE_ST (A:190-202,B:190-202)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
MP2K2_HUMAN
78-101
2
A:78-101
B:78-101
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
MP2K2_HUMAN
190-202
2
A:190-202
B:190-202
[
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]
Exons
(10, 20)
Info
All Exons
Exon 1.2 (A:60-101 | B:59-101)
Exon 1.3 (A:102-150 | B:102-150)
Exon 1.4d (A:151-176 | B:151-176)
Exon 1.5 (A:177-194 | B:177-194)
Exon 1.6a (A:194-235 (gaps) | B:194-235 (gaps...)
Exon 1.7d (A:236-285 | B:236-281)
Exon 1.8 (A:313-328 | B:316-328)
Exon 1.9a (A:329-349 | B:329-349)
Exon 1.9c (A:349-364 | B:349-364)
Exon 1.10c (A:365-393 | B:365-389)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1a/1.2
02: Boundary 1.2/1.3
03: Boundary 1.3/1.4d
04: Boundary 1.4d/1.5
05: Boundary 1.5/1.6a
06: Boundary 1.6a/1.7d
07: Boundary 1.7d/1.8
08: Boundary 1.8/1.9a
09: Boundary 1.9a/1.9c
10: Boundary 1.9c/1.10c
11: Boundary 1.10c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000262948
1a
ENSE00001147081
chr19:
4124126-4123781
346
MP2K2_HUMAN
1-31
31
0
-
-
1.2
ENST00000262948
2
ENSE00001681490
chr19:
4117627-4117417
211
MP2K2_HUMAN
31-101
71
2
A:60-101
B:59-101
42
43
1.3
ENST00000262948
3
ENSE00001603898
chr19:
4110653-4110507
147
MP2K2_HUMAN
102-150
49
2
A:102-150
B:102-150
49
49
1.4d
ENST00000262948
4d
ENSE00001718004
chr19:
4102451-4102374
78
MP2K2_HUMAN
151-176
26
2
A:151-176
B:151-176
26
26
1.5
ENST00000262948
5
ENSE00001762857
chr19:
4101278-4101227
52
MP2K2_HUMAN
177-194
18
2
A:177-194
B:177-194
18
18
1.6a
ENST00000262948
6a
ENSE00000951535
chr19:
4101141-4101017
125
MP2K2_HUMAN
194-235
42
2
A:194-235 (gaps)
B:194-235 (gaps)
42
42
1.7d
ENST00000262948
7d
ENSE00000951536
chr19:
4099412-4099199
214
MP2K2_HUMAN
236-307
72
2
A:236-285
B:236-281
50
46
1.8
ENST00000262948
8
ENSE00000951537
chr19:
4097341-4097277
65
MP2K2_HUMAN
307-328
22
2
A:313-328
B:316-328
16
13
1.9a
ENST00000262948
9a
ENSE00000951538
chr19:
4095447-4095386
62
MP2K2_HUMAN
329-349
21
2
A:329-349
B:329-349
21
21
1.9c
ENST00000262948
9c
ENSE00000663997
chr19:
4094496-4094451
46
MP2K2_HUMAN
349-364
16
2
A:349-364
B:349-364
16
16
1.10c
ENST00000262948
10c
ENSE00001519838
chr19:
4090706-4090319
388
MP2K2_HUMAN
365-400
36
2
A:365-393
B:365-389
29
25
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1s9ia_ (A:)
1b: SCOP_d1s9ib_ (B:)
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Classes
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Folds
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Superfamilies
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(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
Dual specificity mitogen-activated protein kinase kinase 2, Mek2
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1s9ia_
A:
1b
d1s9ib_
B:
[
close SCOP info
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1s9iB01 (B:59-151)
1b: CATH_1s9iA01 (A:60-151)
2a: CATH_1s9iB02 (B:152-389)
2b: CATH_1s9iA02 (A:152-393)
View:
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Classes
(
)
(
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(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
1s9iB01
B:59-151
1b
1s9iA01
A:60-151
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
2a
1s9iB02
B:152-389
2b
1s9iA02
A:152-393
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Pkinase_1s9iB01 (B:72-369)
1b: PFAM_Pkinase_1s9iB02 (B:72-369)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
PKinase
(934)
Family
:
Pkinase
(680)
Homo sapiens (Human)
(521)
1a
Pkinase-1s9iB01
B:72-369
1b
Pkinase-1s9iB02
B:72-369
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]
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Asymmetric Unit 1
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Asym.Unit (105 KB)
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