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1S96
Asym. Unit
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Asym.Unit (80 KB)
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Biol.Unit 2 (220 KB)
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(1)
Title
:
THE 2.0 A X-RAY STRUCTURE OF GUANYLATE KINASE FROM E.COLI
Authors
:
A. Kreusch, G. Spraggon, H. E. Klock, D. Mcmullan, J. Vincent, K. Rodrigues, S. A. Lesley
Date
:
03 Feb 04 (Deposition) - 10 Feb 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (3x)
Keywords
:
X-Ray Structure, Guanylate Kinase, E. Coli, Dimer, Sad, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Kreusch, G. Spraggon, H. E. Klock, D. Mcmullan, J. Vincent, K. Rodrigues, S. A. Lesley
The Structure Of Guanylate Kinase From Escherichia Coli At 2. 0 A Resolution
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(3, 13)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
3a: UNKNOWN ATOM OR ION (UNXa)
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No.
Name
Count
Type
Full Name
1
MSE
10
Mod. Amino Acid
SELENOMETHIONINE
2
PO4
2
Ligand/Ion
PHOSPHATE ION
3
UNX
1
Ligand/Ion
UNKNOWN ATOM OR ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:13 , GLY A:14 , ALA A:15 , GLY A:16 , UNX A:402 , HOH A:482
BINDING SITE FOR RESIDUE PO4 A 401
2
AC2
SOFTWARE
GLY B:14 , ALA B:15 , GLY B:16 , HOH B:633
BINDING SITE FOR RESIDUE PO4 B 501
3
AC3
SOFTWARE
SER A:18 , PO4 A:401 , HOH A:482 , HOH A:514
BINDING SITE FOR RESIDUE UNX A 402
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: GUANYLATE_KINASE_2 (A:4-184,B:4-184)
2: GUANYLATE_KINASE_1 (A:40-57,B:40-57)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GUANYLATE_KINASE_2
PS50052
Guanylate kinase-like domain profile.
KGUA_ECOLI
4-184
2
A:4-184
B:4-184
2
GUANYLATE_KINASE_1
PS00856
Guanylate kinase-like signature.
KGUA_ECOLI
40-57
2
A:40-57
B:40-57
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1s96a_ (A:)
1b: SCOP_d1s96b_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Nucleotide and nucleoside kinases
(231)
Protein domain
:
Guanylate kinase
(13)
Escherichia coli [TaxId: 562]
(6)
1a
d1s96a_
A:
1b
d1s96b_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1s96A02 (A:37-96)
1b: CATH_1s96B02 (B:37-96)
2a: CATH_1s96A01 (A:3-36,A:97-207)
2b: CATH_1s96B01 (B:3-36,B:97-206)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Guanylate Kinase phosphate binding domain
(22)
Homologous Superfamily
:
Guanylate Kinase phosphate binding domain
(22)
Escherichia coli. Organism_taxid: 562.
(4)
1a
1s96A02
A:37-96
1b
1s96B02
B:37-96
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Escherichia coli. Organism_taxid: 562.
(54)
2a
1s96A01
A:3-36,A:97-207
2b
1s96B01
B:3-36,B:97-206
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Guanylate_kin_1s96B01 (B:3-186)
1b: PFAM_Guanylate_kin_1s96B02 (B:3-186)
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Clan
:
P-loop_NTPase
(1112)
Family
:
Guanylate_kin
(23)
Escherichia coli (strain K12)
(1)
1a
Guanylate_kin-1s96B01
B:3-186
1b
Guanylate_kin-1s96B02
B:3-186
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