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1S61
Asym. Unit
Info
Asym.Unit (52 KB)
Biol.Unit 1 (24 KB)
Biol.Unit 2 (25 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF "TRUNCATED" HEMOGLOBIN N (HBN) FROM MYCOBACTERIUM TUBERCULOSIS, SOAKED WITH BUTYL-ISOCYANIDE
Authors
:
M. Milani, A. Pesce, Y. Ouellet, S. Dewilde, J. Friedman, P. Ascenzi, M. Guertin, M. Bolognesi
Date
:
22 Jan 04 (Deposition) - 29 Jun 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Truncated Hemoglobin, Oxygen Storage/Transport Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Milani, A. Pesce, Y. Ouellet, S. Dewilde, J. Friedman, P. Ascenzi, M. Guertin, M. Bolognesi
Heme-Ligand Tunneling In Group I Truncated Hemoglobins
J. Biol. Chem. V. 279 21520 2004
(for further references see the
PDB file header
)
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Hetero Components
(6, 10)
Info
All Hetero Components
1a: CYANIDE ION (CYNa)
1b: CYANIDE ION (CYNb)
2a: HEME C (HECa)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
4a: POTASSIUM ION (Ka)
5a: N-BUTYL ISOCYANIDE (NBNa)
6a: PHOSPHATE ION (PO4a)
6b: PHOSPHATE ION (PO4b)
6c: PHOSPHATE ION (PO4c)
6d: PHOSPHATE ION (PO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CYN
2
Ligand/Ion
CYANIDE ION
2
HEC
1
Ligand/Ion
HEME C
3
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
K
1
Ligand/Ion
POTASSIUM ION
5
NBN
1
Ligand/Ion
N-BUTYL ISOCYANIDE
6
PO4
4
Ligand/Ion
PHOSPHATE ION
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:33 , GLN A:58 , HEC A:144
BINDING SITE FOR RESIDUE CYN A 245
02
AC2
SOFTWARE
TYR B:33 , GLN B:58 , HEM B:144
BINDING SITE FOR RESIDUE CYN B 345
03
AC3
SOFTWARE
ARG B:6 , TYR B:16 , GLY B:21 , HIS B:22 , HOH B:356 , HOH B:402
BINDING SITE FOR RESIDUE PO4 B 301
04
AC4
SOFTWARE
ARG A:53 , LYS A:57
BINDING SITE FOR RESIDUE PO4 A 302
05
AC5
SOFTWARE
GLN B:82 , GLY B:83 , SER B:128 , HOH B:385 , HOH B:391
BINDING SITE FOR RESIDUE PO4 B 303
06
AC6
SOFTWARE
GLN A:82 , K A:401 , GLN B:82 , GLY B:83 , ARG B:84
BINDING SITE FOR RESIDUE PO4 B 304
07
AC7
SOFTWARE
GLN A:79 , VAL A:80 , GLN A:82 , HOH A:437 , GLY B:83 , PO4 B:304
BINDING SITE FOR RESIDUE K A 401
08
AC8
SOFTWARE
PHE A:45 , PHE A:46 , THR A:49 , ARG A:53 , LEU A:54 , GLN A:58 , PHE A:61 , TYR A:72 , GLY A:74 , ALA A:75 , MET A:77 , VAL A:80 , HIS A:81 , ARG A:84 , PHE A:91 , VAL A:94 , NBN A:201 , CYN A:245 , HOH B:385
BINDING SITE FOR RESIDUE HEC A 144
09
AC9
SOFTWARE
PHE B:45 , PHE B:46 , THR B:49 , ARG B:53 , LEU B:54 , GLN B:58 , PHE B:61 , TYR B:72 , GLY B:74 , ALA B:75 , MET B:77 , VAL B:80 , HIS B:81 , ARG B:84 , ILE B:86 , PHE B:91 , VAL B:94 , ILE B:119 , LEU B:122 , CYN B:345 , HOH B:347 , HOH B:355 , HOH B:368
BINDING SITE FOR RESIDUE HEM B 144
10
BC1
SOFTWARE
PHE A:32 , GLN A:58 , PHE A:62 , VAL A:94 , ILE A:119 , HEC A:144
BINDING SITE FOR RESIDUE NBN A 201
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GLOBIN_FAM_2 (A:61-81,B:61-81,A:61-81,B:61-81)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLOBIN_FAM_2
PS01213
Protozoan/cyanobacterial globins signature.
TRHBN_MYCTO
61-81
2
A:61-81
B:61-81
TRHBN_MYCTU
61-81
2
A:61-81
B:61-81
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1s61a_ (A:)
1b: SCOP_d1s61b_ (B:)
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Protein Domains
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Organisms
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
Globin-like
(1308)
Family
:
Truncated hemoglobin
(27)
Protein domain
:
Protozoan/bacterial hemoglobin
(22)
Mycobacterium tuberculosis, HbN [TaxId: 1773]
(8)
1a
d1s61a_
A:
1b
d1s61b_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1s61B00 (B:2-136)
1b: CATH_1s61A00 (A:2-129)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Globin-like
(786)
Homologous Superfamily
:
Globins
(743)
Mycobacterium tuberculosis. Organism_taxid: 1773.
(8)
1a
1s61B00
B:2-136
1b
1s61A00
A:2-129
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Bac_globin_1s61B01 (B:14-129)
1b: PFAM_Bac_globin_1s61B02 (B:14-129)
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Clan
:
Globin
(291)
Family
:
Bac_globin
(12)
Mycobacterium tuberculosis
(5)
1a
Bac_globin-1s61B01
B:14-129
1b
Bac_globin-1s61B02
B:14-129
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (52 KB)
Header - Asym.Unit
Biol.Unit 1 (24 KB)
Header - Biol.Unit 1
Biol.Unit 2 (25 KB)
Header - Biol.Unit 2
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