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1S5Q
Asym. Unit
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Asym.Unit (576 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF MAD1 SID-MSIN3A PAH2 COMPLEX
Authors
:
K. A. Swanson, P. S. Knoepfler, K. Huang, R. S. Kang, S. M. Cowley, C. D. Laherty, R. N. Eisenman, I. Radhakrishnan
Date
:
21 Jan 04 (Deposition) - 06 Jul 04 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (20 x)
Keywords
:
Protein-Peptide Complex, Amphipathic Helix Motif, Four- Helix Bundle, Repressor-Corepressor Complex, Transcription
(Keyword Search:
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Reference
:
K. A. Swanson, P. S. Knoepfler, K. Huang, R. S. Kang, S. M. Cowley, C. D. Laherty, R. N. Eisenman, I. Radhakrishnan
Hbp1 And Mad1 Repressors Bind The Sin3 Corepressor Pah2 Domain With Opposite Helical Orientations.
Nat. Struct. Mol. Biol. V. 11 738 2004
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PAH (-|B:300-383|-)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PAH
PS51477
PAH domain profile.
SIN3A_MOUSE
119-189
300-383
457-526
1
-
B:300-383
-
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Exons
(1, 1)
Info
All Exons
Exon 1.4a (A:6-21)
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1: Boundary -/1.4a
2: Boundary 1.4a/1.5a
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4a
ENST00000264444
4a
ENSE00001885295
chr2:
70142203-70142535
333
MAD1_HUMAN
1-25
25
1
A:6-21
16
1.5a
ENST00000264444
5a
ENSE00001646891
chr2:
70143253-70143352
100
MAD1_HUMAN
25-58
34
0
-
-
1.6
ENST00000264444
6
ENSE00001006489
chr2:
70148868-70148897
30
MAD1_HUMAN
58-68
11
0
-
-
1.7
ENST00000264444
7
ENSE00000759552
chr2:
70162483-70162597
115
MAD1_HUMAN
68-106
39
0
-
-
1.8b
ENST00000264444
8b
ENSE00000759553
chr2:
70164367-70164526
160
MAD1_HUMAN
107-160
54
0
-
-
1.9c
ENST00000264444
9c
ENSE00000846481
chr2:
70165229-70170077
4849
MAD1_HUMAN
160-221
62
0
-
-
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SCOP Domains
(2, 2)
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All SCOP Domains
1a: SCOP_d1s5qb_ (B:)
2a: SCOP_d1s5qa_ (A:)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
PAH2 domain
(10)
Superfamily
:
PAH2 domain
(10)
Family
:
PAH2 domain
(10)
Protein domain
:
Sin3A
(5)
Mouse (Mus musculus) [TaxId: 10090]
(5)
1a
d1s5qb_
B:
Class
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Peptides
(792)
Fold
:
MAD protein fragments
(1)
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MAD protein fragments
(1)
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MAD protein fragments
(1)
Protein domain
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MAD protein fragments
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d1s5qa_
A:
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CATH Domains
(1, 1)
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1a: CATH_1s5qB00 (B:295-383)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Paired amphipathic helix 2 (pah2 repeat)
(6)
Homologous Superfamily
:
[code=1.20.1160.11, no name defined]
(6)
[unclassified]
(3)
1a
1s5qB00
B:295-383
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_PAH_1s5qB01 (B:322-381)
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Clan
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no clan defined [family: PAH]
(7)
Family
:
PAH
(7)
Mus musculus (Mouse)
(7)
1a
PAH-1s5qB01
B:322-381
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