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1S5A
Asym. Unit
Info
Asym.Unit (112 KB)
Biol.Unit 1 (106 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PUTATIVE ISOMERASE FROM BACILLUS SUBTILIS
Authors
:
Y. Kim, L. Lezondra, A. Joachimiak, Midwest Center For Structural (Mcsg)
Date
:
20 Jan 04 (Deposition) - 11 May 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Structural Genomics, Hypothetical Protein, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Kim, L. Lezondra, A. Joachimiak
The Crystal Structure Of Apc1116 From Bacillus Subtilis
To Be Published
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Hetero Components
(3, 29)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACT
4
Ligand/Ion
ACETATE ION
2
GOL
6
Ligand/Ion
GLYCEROL
3
MSE
19
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:64 , TYR A:104 , TYR A:108 , TRP A:126 , GOL A:702 , HOH A:838
BINDING SITE FOR RESIDUE ACT A 801
02
AC2
SOFTWARE
TYR C:64 , TYR C:104 , TYR C:108 , GOL C:703 , HOH C:824
BINDING SITE FOR RESIDUE ACT C 802
03
AC3
SOFTWARE
TYR B:64 , TYR B:104 , TYR B:108 , LEU B:140 , GOL B:704
BINDING SITE FOR RESIDUE ACT B 803
04
AC4
SOFTWARE
TYR D:64 , TYR D:104 , TYR D:108 , GOL D:705
BINDING SITE FOR RESIDUE ACT D 804
05
AC5
SOFTWARE
SER A:81 , SER A:84 , HOH A:802 , HOH A:814 , HOH A:885 , ARG B:14 , MSE B:17 , PRO B:76 , TYR D:79
BINDING SITE FOR RESIDUE GOL A 701
06
AC6
SOFTWARE
PHE A:38 , TYR A:108 , ASP A:124 , ACT A:801 , HOH A:810 , HOH A:838 , HOH A:912
BINDING SITE FOR RESIDUE GOL A 702
07
AC7
SOFTWARE
PHE C:38 , ILE C:61 , TYR C:108 , ASP C:124 , TRP C:126 , ACT C:802 , HOH C:824 , HOH C:858
BINDING SITE FOR RESIDUE GOL C 703
08
AC8
SOFTWARE
TYR B:60 , TYR B:108 , ASP B:124 , TRP B:126 , ACT B:803 , HOH B:835 , HOH B:911
BINDING SITE FOR RESIDUE GOL B 704
09
AC9
SOFTWARE
TYR D:60 , ASP D:124 , TRP D:126 , ACT D:804 , HOH D:863 , HOH D:876
BINDING SITE FOR RESIDUE GOL D 705
10
BC1
SOFTWARE
ARG C:14 , ALA C:18 , GLU C:22
BINDING SITE FOR RESIDUE GOL C 706
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1s5aa_ (A:)
1b: SCOP_d1s5ab_ (B:)
1c: SCOP_d1s5ac_ (C:)
1d: SCOP_d1s5ad_ (D:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cystatin-like
(403)
Superfamily
:
NTF2-like
(231)
Family
:
PhzA/PhzB-like
(5)
Protein domain
:
Hypothetical protein YesE
(1)
Bacillus subtilis [TaxId: 1423]
(1)
1a
d1s5aa_
A:
1b
d1s5ab_
B:
1c
d1s5ac_
C:
1d
d1s5ad_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1s5aA00 (A:4-141)
1b: CATH_1s5aB00 (B:-2-140)
1c: CATH_1s5aC00 (C:0-142)
1d: CATH_1s5aD00 (D:-2-136)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Nuclear Transport Factor 2; Chain: A,
(517)
Homologous Superfamily
:
[code=3.10.450.50, no name defined]
(113)
Bacillus subtilis. Organism_taxid: 1423.
(1)
1a
1s5aA00
A:4-141
1b
1s5aB00
B:-2-140
1c
1s5aC00
C:0-142
1d
1s5aD00
D:-2-136
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_SnoaL_2_1s5aD01 (D:13-122)
1b: PFAM_SnoaL_2_1s5aD02 (D:13-122)
1c: PFAM_SnoaL_2_1s5aD03 (D:13-122)
1d: PFAM_SnoaL_2_1s5aD04 (D:13-122)
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Clans
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Organisms
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)
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)
Clan
:
NTF2
(66)
Family
:
SnoaL_2
(6)
Bacillus subtilis
(1)
1a
SnoaL_2-1s5aD01
D:13-122
1b
SnoaL_2-1s5aD02
D:13-122
1c
SnoaL_2-1s5aD03
D:13-122
1d
SnoaL_2-1s5aD04
D:13-122
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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