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1S4U
Asym. Unit
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Asym.Unit (65 KB)
Biol.Unit 1 (61 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF THE BETA-PROPELLER PROTEIN SKI8P
Authors
:
Z. Cheng, H. Song
Date
:
18 Jan 04 (Deposition) - 28 Dec 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : X
Biol. Unit 1: X (1x)
Keywords
:
Wd Repeat, Antiviral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Cheng, Y. Liu, C. Wang, R. Parker, H. Song
Crystal Structure Of Ski8P, A Wd-Repeat Protein With Dual Roles In Mrna Metabolism And Meiotic Recombination
Protein Sci. V. 13 2673 2004
(for further references see the
PDB file header
)
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Hetero Components
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Sites
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PROSITE Patterns/Profiles
(1, 2)
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1: WD_REPEATS_1 (X:29-43|X:306-320)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
WD_REPEATS_1
PS00678
Trp-Asp (WD) repeats signature.
SKI8_YEAST
29-43
306-320
2
X:29-43
X:306-320
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Exons
(1, 1)
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Exon 1.1 (X:3-392 (gaps))
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1: Boundary -/1.1
2: Boundary 1.1/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YGL213C
1
YGL213C.1
VII:91251-90058
1194
SKI8_YEAST
1-397
397
1
X:3-392 (gaps)
390
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SCOP Domains
(1, 1)
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1a: SCOP_d1s4ux_ (X:)
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Class
:
All beta proteins
(24004)
Fold
:
7-bladed beta-propeller
(245)
Superfamily
:
WD40 repeat-like
(95)
Family
:
WD40-repeat
(53)
Protein domain
:
Antiviral protein Ski8 (Ski8p)
(2)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(2)
1a
d1s4ux_
X:
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CATH Domains
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1a: CATH_1s4uX00 (X:3-392)
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Class
:
Mainly Beta
(13760)
Architecture
:
7 Propellor
(136)
Topology
:
Methylamine Dehydrogenase; Chain H
(136)
Homologous Superfamily
:
YVTN repeat-like/Quinoprotein amine dehydrogenase
(76)
Baker's yeast (Saccharomyces cerevisiae)
(12)
1a
1s4uX00
X:3-392
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_WD40_1s4uX01 (X:288-319)
1b: PFAM_WD40_1s4uX02 (X:288-319)
1c: PFAM_WD40_1s4uX03 (X:288-319)
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Clan
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Beta_propeller
(192)
Family
:
WD40
(64)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(18)
1a
WD40-1s4uX01
X:288-319
1b
WD40-1s4uX02
X:288-319
1c
WD40-1s4uX03
X:288-319
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