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1S4N
Asym. Unit
Info
Asym.Unit (137 KB)
Biol.Unit 1 (131 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF YEAST ALPHA1,2-MANNOSYLTRANSFERASE KRE2P/MNT1P
Authors
:
Y. D. Lobsanov, P. A. Romero, B. Sleno, B. Yu, P. Yip, A. Herscovics, P. L.
Date
:
16 Jan 04 (Deposition) - 04 May 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.01
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Alpha/Beta Fold, Nucleotide-Binding Domain, Rossmann Fold, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. D. Lobsanov, P. A. Romero, B. Sleno, B. Yu, P. Yip, A. Herscovics, P. L. Howell
Structure Of Kre2P/Mnt1P: A Yeast {Alpha}1, 2-Mannosyltransferase Involved In Mannoprotein Biosynthesis
J. Biol. Chem. V. 279 17921 2004
[
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Hetero Components
(6, 16)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
4c: ALPHA-D-MANNOSE (MANc)
4d: ALPHA-D-MANNOSE (MANd)
4e: ALPHA-D-MANNOSE (MANe)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
CL
2
Ligand/Ion
CHLORIDE ION
3
GOL
4
Ligand/Ion
GLYCEROL
4
MAN
5
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
NDG
1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:197 , LYS A:200 , GLU A:203 , NAG A:701 , HOH A:1147 , HOH A:1166 , NAG B:700
BINDING SITE FOR RESIDUE NAG A 700
02
AC2
SOFTWARE
NAG A:700 , BMA A:702 , MAN A:704 , HOH A:1088 , HOH A:1162
BINDING SITE FOR RESIDUE NAG A 701
03
AC3
SOFTWARE
NAG A:701 , MAN A:703 , MAN A:706 , HOH A:1058 , HOH A:1103
BINDING SITE FOR RESIDUE BMA A 702
04
AC4
SOFTWARE
BMA A:702 , MAN A:704 , MAN A:705 , HOH A:1056 , HOH A:1065 , HOH A:1088
BINDING SITE FOR RESIDUE MAN A 703
05
AC5
SOFTWARE
NAG A:701 , MAN A:703 , HOH A:1118
BINDING SITE FOR RESIDUE MAN A 704
06
AC6
SOFTWARE
MAN A:703 , HOH A:991 , HOH A:1167
BINDING SITE FOR RESIDUE MAN A 705
07
AC7
SOFTWARE
BMA A:702 , MAN A:707 , HOH A:1177
BINDING SITE FOR RESIDUE MAN A 706
08
AC8
SOFTWARE
MAN A:706 , HOH A:1093
BINDING SITE FOR RESIDUE MAN A 707
09
AC9
SOFTWARE
NAG A:700 , ASN B:197 , THR B:199 , LYS B:200 , GLU B:203 , NDG B:701 , HOH B:1118
BINDING SITE FOR RESIDUE NAG B 700
10
BC1
SOFTWARE
GLU B:203 , NAG B:700
BINDING SITE FOR RESIDUE NDG B 701
11
BC2
SOFTWARE
TYR A:419 , HOH A:1155 , TYR B:214 , HOH B:836
BINDING SITE FOR RESIDUE CL A 900
12
BC3
SOFTWARE
TYR A:214 , HOH A:907 , TYR B:419
BINDING SITE FOR RESIDUE CL A 901
13
BC4
SOFTWARE
TYR A:220 , MET A:223 , ARG A:245 , ASN A:327 , GLY A:360 , ASP A:361 , ALA A:362 , HOH A:998
BINDING SITE FOR RESIDUE GOL A 800
14
BC5
SOFTWARE
TYR A:214 , ASP B:392 , ASN B:412 , PHE B:414 , GLN B:417
BINDING SITE FOR RESIDUE GOL B 801
15
BC6
SOFTWARE
TYR B:220 , MET B:223 , ARG B:245 , TRP B:325 , GLY B:360 , ASP B:361 , ALA B:362 , HOH B:880 , HOH B:1014
BINDING SITE FOR RESIDUE GOL B 802
16
BC7
SOFTWARE
TYR A:391 , ASP A:392 , ASN A:412 , PHE A:414 , GLN A:417 , TYR B:214
BINDING SITE FOR RESIDUE GOL A 803
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(1, 2)
Info
All Exons
Exon 1.1 (A:104-442 (gaps) | B:103-442 (gaps...)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YDR483W
1
YDR483W.1
IV:1421150-1422478
1329
KRE2_YEAST
1-442
442
2
A:104-442 (gaps)
B:103-442 (gaps)
339
340
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1s4na_ (A:)
1b: SCOP_d1s4nb_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
Glycolipid 2-alpha-mannosyltransferase
(3)
Protein domain
:
Glycolipid 2-alpha-mannosyltransferase
(3)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(3)
1a
d1s4na_
A:
1b
d1s4nb_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1s4nB00 (B:103-442)
1b: CATH_1s4nA00 (A:104-442)
View:
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Classes
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Architectures
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Topologies
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Homologous Superfamily
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Baker's yeast (Saccharomyces cerevisiae)
(3)
1a
1s4nB00
B:103-442
1b
1s4nA00
A:104-442
[
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]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Glyco_transf_15_1s4nB01 (B:103-391)
1b: PFAM_Glyco_transf_15_1s4nB02 (B:103-391)
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Clans
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(
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Families
(
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(
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Organisms
(
)
(
)
Clan
:
no clan defined [family: Glyco_transf_15]
(3)
Family
:
Glyco_transf_15
(3)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(3)
1a
Glyco_transf_15-1s4nB01
B:103-391
1b
Glyco_transf_15-1s4nB02
B:103-391
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (137 KB)
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