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1S4M
Asym. Unit
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Asym.Unit (101 KB)
Biol.Unit 1 (50 KB)
Biol.Unit 2 (49 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FLAVIN BINDING TO FAD SYNTHETASE FROM THERMOTOGA MARITINA
Authors
:
W. Wang, R. Kim, H. Yokota, S. -H. Kim, Berkeley Structural Genomics Center (Bsgc)
Date
:
16 Jan 04 (Deposition) - 19 Oct 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Fad, Flavin, Riboflavin Kinase, Structural Genomics, Bsgc Structure Funded By Nih, Protein Structure Initiative, Psi, Berkeley Structural Genomics Center, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
W. Wang, R. Kim, H. Yokota, S. -H. Kim
Crystal Structure Of Flavin Binding To Fad Synthetase Of Thermotoga Maritima
Proteins V. 58 246 2005
(for further references see the
PDB file header
)
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: LUMICHROME (LUMa)
1b: LUMICHROME (LUMb)
2a: MAGNESIUM ION (MGa)
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No.
Name
Count
Type
Full Name
1
LUM
2
Ligand/Ion
LUMICHROME
2
MG
1
Ligand/Ion
MAGNESIUM ION
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Sites
(3, 3)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:119 , HOH A:738 , HOH A:739 , HOH A:740 , HOH A:741 , HOH B:652
BINDING SITE FOR RESIDUE MG A 295
2
AC2
SOFTWARE
VAL A:197 , VAL A:213 , ASN A:215 , ARG A:255 , GLU A:257 , LYS A:258 , PHE A:260 , ASP A:273 , ILE B:563
BINDING SITE FOR RESIDUE LUM A 294
3
AC3
SOFTWARE
VAL B:497 , VAL B:513 , ASN B:515 , ARG B:555 , GLU B:557 , LYS B:558 , PHE B:560 , LEU B:566 , ILE B:570 , ASP B:573
BINDING SITE FOR RESIDUE LUM B 594
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SAPs(SNPs)/Variants
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1s4ma1 (A:159-288)
1b: SCOP_d1s4mb1 (B:459-589)
2a: SCOP_d1s4ma2 (A:1-158)
2b: SCOP_d1s4mb2 (B:301-458)
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Class
:
All beta proteins
(24004)
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Riboflavin kinase-like
(23)
Family
:
ATP-dependent riboflavin kinase-like
(14)
Protein domain
:
Riboflavin kinase domain of bifunctional FAD synthetase
(6)
Thermotoga maritima [TaxId: 2336]
(6)
1a
d1s4ma1
A:159-288
1b
d1s4mb1
B:459-589
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Nucleotidylyl transferase
(325)
Family
:
Adenylyltransferase
(56)
Protein domain
:
FMN adenylyltransferase domain of bifunctional FAD synthetase
(6)
Thermotoga maritima [TaxId: 2336]
(6)
2a
d1s4ma2
A:1-158
2b
d1s4mb2
B:301-458
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1s4mA01 (A:1-159)
1b: CATH_1s4mB01 (B:301-459)
2a: CATH_1s4mA02 (A:160-288)
2b: CATH_1s4mB02 (B:460-589)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1
(328)
Thermotoga maritima. Organism_taxid: 2336.
(5)
1a
1s4mA01
A:1-159
1b
1s4mB01
B:301-459
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Elongation Factor Tu (Ef-tu); domain 3
(323)
Homologous Superfamily
:
Riboflavin kinase-like
(22)
Thermotoga maritima. Organism_taxid: 2336.
(4)
2a
1s4mA02
A:160-288
2b
1s4mB02
B:460-589
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Asym.Unit (101 KB)
Header - Asym.Unit
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