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1S4F
Biol. Unit 2
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Asym.Unit (356 KB)
Biol.Unit 1 (92 KB)
Biol.Unit 2 (92 KB)
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Biol.Unit 4 (91 KB)
Biol.Unit 5 (179 KB)
Biol.Unit 6 (177 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RNA-DEPENDENT RNA POLYMERASE CONSTRUCT 2 FROM BOVINE VIRAL DIARRHEA VIRUS (BVDV)
Authors
:
K. H. Choi, J. M. Groarke, D. C. Young, R. J. Kuhn, J. L. Smith, D. C. Pevear M. G. Rossmann
Date
:
16 Jan 04 (Deposition) - 06 Apr 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: A,B (1x)
Biol. Unit 6: C,D (1x)
Keywords
:
Polymerase, Rna Synthesis, Primer Independent Initiation, De Novo Initiation, Bovine Viral Diarrhea Virus, Bvdv, Replication, Rna Binding Protein
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Reference
:
K. H. Choi, J. M. Groarke, D. C. Young, R. J. Kuhn, J. L. Smith, D. C. Pevear, M. G. Rossmann
The Structure Of The Rna-Dependent Rna Polymerase From Bovine Viral Diarrhea Virus Establishes The Role Of Gtp In De Novo Initiation.
Proc. Natl. Acad. Sci. Usa V. 101 4425 2004
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Hetero Components
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PROSITE Patterns/Profiles
(1, 1)
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1: RDRP_SSRNA_POS (B:339-462)
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RDRP_SSRNA_POS
PS50507
RdRp of positive ssRNA viruses catalytic domain profile.
POLG_BVDVN
3608-3731
1
-
B:339-462
-
-
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SCOP Domains
(1, 4)
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1a: SCOP_d1s4fa_ (A:)
1b: SCOP_d1s4fb_ (B:)
1c: SCOP_d1s4fc_ (C:)
1d: SCOP_d1s4fd_ (D:)
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Class
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Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
RNA-dependent RNA-polymerase
(253)
Protein domain
:
Viral RNA polymerase
(148)
Bovine viral diarrhea virus [TaxId: 11099]
(3)
1a
d1s4fa_
A:
1b
d1s4fb_
B:
1c
d1s4fc_
C:
1d
d1s4fd_
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Pfam Domains
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1a: PFAM_RdRP_3_1s4fD01 (D:229-567)
1b: PFAM_RdRP_3_1s4fD02 (D:229-567)
1c: PFAM_RdRP_3_1s4fD03 (D:229-567)
1d: PFAM_RdRP_3_1s4fD04 (D:229-567)
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Clan
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RdRP
(210)
Family
:
RdRP_3
(43)
Bovine viral diarrhea virus (isolate NADL) (BVDV) (Mucosal disease virus)
(3)
1a
RdRP_3-1s4fD01
D:229-567
1b
RdRP_3-1s4fD02
D:229-567
1c
RdRP_3-1s4fD03
D:229-567
1d
RdRP_3-1s4fD04
D:229-567
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (356 KB)
Header - Asym.Unit
Biol.Unit 1 (92 KB)
Header - Biol.Unit 1
Biol.Unit 2 (92 KB)
Header - Biol.Unit 2
Biol.Unit 3 (92 KB)
Header - Biol.Unit 3
Biol.Unit 4 (91 KB)
Header - Biol.Unit 4
Biol.Unit 5 (179 KB)
Header - Biol.Unit 5
Biol.Unit 6 (177 KB)
Header - Biol.Unit 6
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