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1S47
Asym. Unit
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Asym.Unit (38 KB)
Biol.Unit 1 (12 KB)
Biol.Unit 2 (12 KB)
Biol.Unit 3 (12 KB)
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Title
:
CRYSTAL STRUCTURE ANALYSIS OF THE DNA QUADRUPLEX D(TGGGGT)S2
Authors
:
C. Caceres, G. Wright, C. Gouyette, G. Parkinson, J. A. Subirana
Date
:
15 Jan 04 (Deposition) - 24 Feb 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: I,J,K,L (1x)
Keywords
:
Quadruplex Dna, Thymine Triads And Tetrads, Thallium
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Caceres, G. Wright, C. Gouyette, G. Parkinson, J. A. Subirana
A Thymine Tetrad In D(Tggggt) Quadruplexes Stabilized With Tl+1/Na+1 Ions
Nucleic Acids Res. V. 32 1097 2004
(for further references see the
PDB file header
)
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Hetero Components
(2, 13)
Info
All Hetero Components
1a: SODIUM ION (NAa)
1b: SODIUM ION (NAb)
1c: SODIUM ION (NAc)
1d: SODIUM ION (NAd)
1e: SODIUM ION (NAe)
1f: SODIUM ION (NAf)
1g: SODIUM ION (NAg)
2a: THALLIUM (I) ION (TLa)
2b: THALLIUM (I) ION (TLb)
2c: THALLIUM (I) ION (TLc)
2d: THALLIUM (I) ION (TLd)
2e: THALLIUM (I) ION (TLe)
2f: THALLIUM (I) ION (TLf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NA
7
Ligand/Ion
SODIUM ION
2
TL
6
Ligand/Ion
THALLIUM (I) ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
DG E:582 , DG F:692 , DG G:802 , DG H:912 , NA H:1506 , DG I:1022 , TL I:1700 , DG J:1132 , DG K:1242 , DG L:1352
BINDING SITE FOR RESIDUE NA E 1505
02
AC2
SOFTWARE
DG E:582 , DG E:583 , NA E:1505 , TL E:1701 , DG F:692 , DG F:693 , DG G:802 , DG G:803 , DG H:912 , DG H:913
BINDING SITE FOR RESIDUE NA H 1506
03
AC3
SOFTWARE
DG E:584 , DG E:585 , DG F:694 , DG F:695 , NA F:1510 , DG G:804 , DG G:805 , DG H:914 , DG H:915
BINDING SITE FOR RESIDUE NA E 1507
04
AC4
SOFTWARE
DG E:585 , NA E:1507 , DG F:695 , DT F:696 , DG G:805 , DG H:915 , HOH H:1944
BINDING SITE FOR RESIDUE NA F 1510
05
AC5
SOFTWARE
DG I:1025 , TL I:1705 , DG J:1135 , DG K:1245 , DG L:1355
BINDING SITE FOR RESIDUE NA K 1512
06
AC6
SOFTWARE
DT A:101 , DG A:102 , DG B:212 , DT C:321 , DG C:322 , DG D:432 , TL D:1704
BINDING SITE FOR RESIDUE NA A 1514
07
AC7
SOFTWARE
DG A:104 , DG A:105 , DG B:214 , DG B:215 , TL B:1703 , DG C:324 , DG C:325 , DG D:434 , DG D:435
BINDING SITE FOR RESIDUE NA A 1515
08
AC8
SOFTWARE
NA E:1505 , DG I:1022 , DG I:1023 , TL I:1702 , DG J:1132 , DG J:1133 , DG K:1242 , DG K:1243 , DG L:1352 , DG L:1353
BINDING SITE FOR RESIDUE TL I 1700
09
AC9
SOFTWARE
DG E:583 , DG E:584 , DG F:693 , DG F:694 , DG G:803 , DG G:804 , DG H:913 , DG H:914 , NA H:1506
BINDING SITE FOR RESIDUE TL E 1701
10
BC1
SOFTWARE
DG I:1023 , DG I:1024 , TL I:1700 , TL I:1705 , DG J:1133 , DG J:1134 , DG K:1243 , DG K:1244 , DG L:1353 , DG L:1354
BINDING SITE FOR RESIDUE TL I 1702
11
BC2
SOFTWARE
DG A:103 , DG A:104 , NA A:1515 , DG B:213 , DG B:214 , DG C:323 , DG C:324 , DG D:433 , DG D:434 , TL D:1704
BINDING SITE FOR RESIDUE TL B 1703
12
BC3
SOFTWARE
DG A:102 , DG A:103 , NA A:1514 , DG B:212 , DG B:213 , TL B:1703 , DG C:322 , DG C:323 , DG D:432 , DG D:433
BINDING SITE FOR RESIDUE TL D 1704
13
BC4
SOFTWARE
DG I:1024 , DG I:1025 , TL I:1702 , DG J:1134 , DG J:1135 , DG K:1244 , DG K:1245 , NA K:1512 , DG L:1354 , DG L:1355
BINDING SITE FOR RESIDUE TL I 1705
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (38 KB)
Header - Asym.Unit
Biol.Unit 1 (12 KB)
Header - Biol.Unit 1
Biol.Unit 2 (12 KB)
Header - Biol.Unit 2
Biol.Unit 3 (12 KB)
Header - Biol.Unit 3
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