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1S3Q
Asym. Unit
Info
Asym.Unit (362 KB)
Biol.Unit 1 (678 KB)
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(1)
Title
:
CRYSTAL STRUCTURES OF A NOVEL OPEN PORE FERRITIN FROM THE HYPERTHERMOPHILIC ARCHAEON ARCHAEOGLOBUS FULGIDUS
Authors
:
E. Johnson, D. Cascio, M. Sawaya, I. Schroeder
Date
:
13 Jan 04 (Deposition) - 12 Apr 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (2x)
Keywords
:
Ferroxidase, Four Helix Bundle, Iron Storage, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Johnson, D. Cascio, M. R. Sawaya, M. Gingery, I. Schroder
Crystal Structures Of A Tetrahedral Open Pore Ferritin From The Hyperthermophilic Archaeon Archaeoglobus Fulgidus.
Structure V. 13 637 2005
[
close entry info
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Hetero Components
(2, 121)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1aa: SELENOMETHIONINE (MSEaa)
1ab: SELENOMETHIONINE (MSEab)
1ac: SELENOMETHIONINE (MSEac)
1ad: SELENOMETHIONINE (MSEad)
1ae: SELENOMETHIONINE (MSEae)
1af: SELENOMETHIONINE (MSEaf)
1ag: SELENOMETHIONINE (MSEag)
1ah: SELENOMETHIONINE (MSEah)
1ai: SELENOMETHIONINE (MSEai)
1aj: SELENOMETHIONINE (MSEaj)
1ak: SELENOMETHIONINE (MSEak)
1al: SELENOMETHIONINE (MSEal)
1am: SELENOMETHIONINE (MSEam)
1an: SELENOMETHIONINE (MSEan)
1ao: SELENOMETHIONINE (MSEao)
1ap: SELENOMETHIONINE (MSEap)
1aq: SELENOMETHIONINE (MSEaq)
1ar: SELENOMETHIONINE (MSEar)
1as: SELENOMETHIONINE (MSEas)
1at: SELENOMETHIONINE (MSEat)
1au: SELENOMETHIONINE (MSEau)
1av: SELENOMETHIONINE (MSEav)
1aw: SELENOMETHIONINE (MSEaw)
1ax: SELENOMETHIONINE (MSEax)
1ay: SELENOMETHIONINE (MSEay)
1az: SELENOMETHIONINE (MSEaz)
1b: SELENOMETHIONINE (MSEb)
1ba: SELENOMETHIONINE (MSEba)
1bb: SELENOMETHIONINE (MSEbb)
1bc: SELENOMETHIONINE (MSEbc)
1bd: SELENOMETHIONINE (MSEbd)
1be: SELENOMETHIONINE (MSEbe)
1bf: SELENOMETHIONINE (MSEbf)
1bg: SELENOMETHIONINE (MSEbg)
1bh: SELENOMETHIONINE (MSEbh)
1bi: SELENOMETHIONINE (MSEbi)
1bj: SELENOMETHIONINE (MSEbj)
1bk: SELENOMETHIONINE (MSEbk)
1bl: SELENOMETHIONINE (MSEbl)
1bm: SELENOMETHIONINE (MSEbm)
1bn: SELENOMETHIONINE (MSEbn)
1bo: SELENOMETHIONINE (MSEbo)
1bp: SELENOMETHIONINE (MSEbp)
1bq: SELENOMETHIONINE (MSEbq)
1br: SELENOMETHIONINE (MSEbr)
1bs: SELENOMETHIONINE (MSEbs)
1bt: SELENOMETHIONINE (MSEbt)
1bu: SELENOMETHIONINE (MSEbu)
1bv: SELENOMETHIONINE (MSEbv)
1bw: SELENOMETHIONINE (MSEbw)
1bx: SELENOMETHIONINE (MSEbx)
1by: SELENOMETHIONINE (MSEby)
1bz: SELENOMETHIONINE (MSEbz)
1c: SELENOMETHIONINE (MSEc)
1ca: SELENOMETHIONINE (MSEca)
1cb: SELENOMETHIONINE (MSEcb)
1cc: SELENOMETHIONINE (MSEcc)
1cd: SELENOMETHIONINE (MSEcd)
1ce: SELENOMETHIONINE (MSEce)
1cf: SELENOMETHIONINE (MSEcf)
1cg: SELENOMETHIONINE (MSEcg)
1ch: SELENOMETHIONINE (MSEch)
1ci: SELENOMETHIONINE (MSEci)
1cj: SELENOMETHIONINE (MSEcj)
1ck: SELENOMETHIONINE (MSEck)
1cl: SELENOMETHIONINE (MSEcl)
1cm: SELENOMETHIONINE (MSEcm)
1cn: SELENOMETHIONINE (MSEcn)
1co: SELENOMETHIONINE (MSEco)
1cp: SELENOMETHIONINE (MSEcp)
1cq: SELENOMETHIONINE (MSEcq)
1cr: SELENOMETHIONINE (MSEcr)
1cs: SELENOMETHIONINE (MSEcs)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
1w: SELENOMETHIONINE (MSEw)
1x: SELENOMETHIONINE (MSEx)
1y: SELENOMETHIONINE (MSEy)
1z: SELENOMETHIONINE (MSEz)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
2f: ZINC ION (ZNf)
2g: ZINC ION (ZNg)
2h: ZINC ION (ZNh)
2i: ZINC ION (ZNi)
2j: ZINC ION (ZNj)
2k: ZINC ION (ZNk)
2l: ZINC ION (ZNl)
2m: ZINC ION (ZNm)
2n: ZINC ION (ZNn)
2o: ZINC ION (ZNo)
2p: ZINC ION (ZNp)
2q: ZINC ION (ZNq)
2r: ZINC ION (ZNr)
2s: ZINC ION (ZNs)
2t: ZINC ION (ZNt)
2u: ZINC ION (ZNu)
2v: ZINC ION (ZNv)
2w: ZINC ION (ZNw)
2x: ZINC ION (ZNx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
97
Mod. Amino Acid
SELENOMETHIONINE
2
ZN
24
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:19 , GLU A:52 , HIS A:55 , ZN A:902 , HOH A:937 , HOH A:971
BINDING SITE FOR RESIDUE ZN A 901
02
AC2
SOFTWARE
GLU A:52 , GLU A:96 , GLU A:132 , ZN A:901 , HOH A:937
BINDING SITE FOR RESIDUE ZN A 902
03
AC3
SOFTWARE
GLU B:19 , GLU B:52 , HIS B:55 , ZN B:904 , HOH B:917 , HOH B:967
BINDING SITE FOR RESIDUE ZN B 903
04
AC4
SOFTWARE
GLU B:52 , HIS B:55 , GLU B:96 , GLU B:132 , ZN B:903 , HOH B:917
BINDING SITE FOR RESIDUE ZN B 904
05
AC5
SOFTWARE
GLU C:19 , GLU C:52 , HIS C:55 , ZN C:906 , HOH C:943
BINDING SITE FOR RESIDUE ZN C 905
06
AC6
SOFTWARE
GLU C:52 , GLU C:96 , GLU C:132 , ZN C:905
BINDING SITE FOR RESIDUE ZN C 906
07
AC7
SOFTWARE
GLU D:19 , GLU D:52 , HIS D:55 , ZN D:908 , HOH D:913
BINDING SITE FOR RESIDUE ZN D 907
08
AC8
SOFTWARE
GLU D:52 , GLU D:96 , GLU D:132 , ZN D:907 , HOH D:913
BINDING SITE FOR RESIDUE ZN D 908
09
AC9
SOFTWARE
GLU E:19 , GLU E:52 , HIS E:55 , ZN E:910 , HOH E:912
BINDING SITE FOR RESIDUE ZN E 909
10
BC1
SOFTWARE
GLU E:52 , GLU E:96 , GLU E:132 , ZN E:909 , HOH E:912
BINDING SITE FOR RESIDUE ZN E 910
11
BC2
SOFTWARE
GLU F:19 , GLU F:52 , HIS F:55 , ZN F:912
BINDING SITE FOR RESIDUE ZN F 911
12
BC3
SOFTWARE
GLU F:52 , GLU F:96 , GLU F:132 , ZN F:911 , HOH F:940
BINDING SITE FOR RESIDUE ZN F 912
13
BC4
SOFTWARE
GLU G:19 , GLU G:52 , HIS G:55 , ZN G:914 , HOH G:981 , HOH G:995
BINDING SITE FOR RESIDUE ZN G 913
14
BC5
SOFTWARE
GLU G:52 , GLU G:96 , GLU G:132 , ZN G:913 , HOH G:981
BINDING SITE FOR RESIDUE ZN G 914
15
BC6
SOFTWARE
GLU H:19 , GLU H:52 , HIS H:55 , ZN H:916 , HOH H:947
BINDING SITE FOR RESIDUE ZN H 915
16
BC7
SOFTWARE
GLU H:52 , GLU H:96 , GLU H:132 , ZN H:915 , HOH H:947
BINDING SITE FOR RESIDUE ZN H 916
17
BC8
SOFTWARE
GLU I:19 , GLU I:52 , HIS I:55 , ZN I:918 , HOH I:942
BINDING SITE FOR RESIDUE ZN I 917
18
BC9
SOFTWARE
GLU I:52 , GLU I:96 , GLU I:132 , ZN I:917 , HOH I:942
BINDING SITE FOR RESIDUE ZN I 918
19
CC1
SOFTWARE
GLU J:19 , GLU J:52 , HIS J:55 , ZN J:920 , HOH J:948 , HOH J:977
BINDING SITE FOR RESIDUE ZN J 919
20
CC2
SOFTWARE
GLU J:52 , GLU J:96 , GLU J:132 , ZN J:919 , HOH J:948
BINDING SITE FOR RESIDUE ZN J 920
21
CC3
SOFTWARE
GLU K:19 , GLU K:52 , HIS K:55 , ZN K:922 , HOH K:976
BINDING SITE FOR RESIDUE ZN K 921
22
CC4
SOFTWARE
GLU K:52 , GLU K:96 , GLU K:132 , ZN K:921 , HOH K:976
BINDING SITE FOR RESIDUE ZN K 922
23
CC5
SOFTWARE
GLU L:19 , GLU L:52 , HIS L:55 , ZN L:924 , HOH L:960
BINDING SITE FOR RESIDUE ZN L 923
24
CC6
SOFTWARE
GLU L:52 , GLU L:96 , GLU L:132 , ZN L:923 , HOH L:960
BINDING SITE FOR RESIDUE ZN L 924
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1s3qb_ (B:)
1b: SCOP_d1s3qc_ (C:)
1c: SCOP_d1s3ql_ (L:)
1d: SCOP_d1s3qd_ (D:)
1e: SCOP_d1s3qe_ (E:)
1f: SCOP_d1s3qf_ (F:)
1g: SCOP_d1s3qg_ (G:)
1h: SCOP_d1s3qh_ (H:)
1i: SCOP_d1s3qi_ (I:)
1j: SCOP_d1s3qj_ (J:)
1k: SCOP_d1s3qk_ (K:)
2a: SCOP_d1s3qa1 (A:3-164)
View:
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Classes
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)
(
)
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(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
automated matches
(54)
Protein domain
:
automated matches
(54)
Archaeoglobus fulgidus [TaxId: 2234]
(1)
1a
d1s3qb_
B:
1b
d1s3qc_
C:
1c
d1s3ql_
L:
1d
d1s3qd_
D:
1e
d1s3qe_
E:
1f
d1s3qf_
F:
1g
d1s3qg_
G:
1h
d1s3qh_
H:
1i
d1s3qi_
I:
1j
d1s3qj_
J:
1k
d1s3qk_
K:
Family
:
Ferritin
(232)
Protein domain
:
Non-hem ferritin
(13)
Archaeoglobus fulgidus [TaxId: 2234]
(1)
2a
d1s3qa1
A:3-164
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_1s3qG00 (G:2-164)
1b: CATH_1s3qJ00 (J:2-164)
1c: CATH_1s3qK00 (K:3-164)
1d: CATH_1s3qL00 (L:3-164)
1e: CATH_1s3qA00 (A:3-164)
1f: CATH_1s3qB00 (B:3-164)
1g: CATH_1s3qC00 (C:3-164)
1h: CATH_1s3qD00 (D:3-164)
1i: CATH_1s3qE00 (E:3-164)
1j: CATH_1s3qF00 (F:3-164)
1k: CATH_1s3qH00 (H:3-164)
1l: CATH_1s3qI00 (I:3-164)
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Ferritin;
(180)
Homologous Superfamily
:
[code=1.20.1260.10, no name defined]
(180)
Archaeoglobus fulgidus. Organism_taxid: 2234.
(1)
1a
1s3qG00
G:2-164
1b
1s3qJ00
J:2-164
1c
1s3qK00
K:3-164
1d
1s3qL00
L:3-164
1e
1s3qA00
A:3-164
1f
1s3qB00
B:3-164
1g
1s3qC00
C:3-164
1h
1s3qD00
D:3-164
1i
1s3qE00
E:3-164
1j
1s3qF00
F:3-164
1k
1s3qH00
H:3-164
1l
1s3qI00
I:3-164
[
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Pfam Domains
(0, 0)
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all PFAM domains
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