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1S3O
Asym. Unit
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Asym.Unit (40 KB)
Biol.Unit 1 (37 KB)
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(1)
Title
:
HUMAN MITOCHONDRIAL SINGLE STRAND DNA BINDING PROTEIN (HMSSB)
Authors
:
C. Venclovas, K. Ginalski, C. Kang
Date
:
13 Jan 04 (Deposition) - 22 Jun 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.47
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Ob Fold, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Venclovas, K. Ginalski, C. Kang
Sequence-Structure Mapping Errors In The Pdb: Ob-Fold Domains
Protein Sci. V. 13 1594 2004
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: SSB (A:14-125,B:14-125)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SSB
PS50935
Single-strand binding (SSB) domain profile.
SSBP_HUMAN
30-141
2
A:14-125
B:14-125
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Exons
(5, 10)
Info
All Exons
Exon 1.5 (A:10-13 | B:10-13)
Exon 1.6 (A:13-51 | B:13-51)
Exon 1.7 (A:61-89 | B:65-89)
Exon 1.8b (A:89-119 | B:89-119)
Exon 1.9f (A:119-125 | B:119-126)
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All Exon Boundaries
1: Boundary 1.3a/1.5
2: Boundary 1.5/1.6
3: Boundary 1.6/1.7
4: Boundary 1.7/1.8b
5: Boundary 1.8b/1.9f
6: Boundary 1.9f/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000265304
1a
ENSE00001811854
chr7:
141438121-141438210
90
SSBP_HUMAN
-
0
0
-
-
1.3a
ENST00000265304
3a
ENSE00002141807
chr7:
141438924-141438990
67
SSBP_HUMAN
1-8
8
0
-
-
1.5
ENST00000265304
5
ENSE00002178642
chr7:
141441969-141442029
61
SSBP_HUMAN
9-29
21
2
A:10-13
B:10-13
4
4
1.6
ENST00000265304
6
ENSE00000727735
chr7:
141443361-141443501
141
SSBP_HUMAN
29-76
48
2
A:13-51
B:13-51
39
39
1.7
ENST00000265304
7
ENSE00000727739
chr7:
141443702-141443789
88
SSBP_HUMAN
76-105
30
2
A:61-89
B:65-89
29
25
1.8b
ENST00000265304
8b
ENSE00000872183
chr7:
141445296-141445384
89
SSBP_HUMAN
105-135
31
2
A:89-119
B:89-119
31
31
1.9f
ENST00000265304
9f
ENSE00001845616
chr7:
141450111-141450261
151
SSBP_HUMAN
135-148
14
2
A:119-125
B:119-126
7
8
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1s3oa_ (A:)
1b: SCOP_d1s3ob_ (B:)
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Classes
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Protein Domains
(
)
(
)
Organisms
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(
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Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
Nucleic acid-binding proteins
(590)
Family
:
Single strand DNA-binding domain, SSB
(96)
Protein domain
:
ssDNA-binding protein
(13)
Human (Homo sapiens), mitochondria [TaxId: 9606]
(2)
1a
d1s3oa_
A:
1b
d1s3ob_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1s3oB00 (B:10-126)
1b: CATH_1s3oA00 (A:10-125)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
Nucleic acid-binding proteins
(483)
Human (Homo sapiens)
(27)
1a
1s3oB00
B:10-126
1b
1s3oA00
A:10-125
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_SSB_1s3oB01 (B:14-124)
1b: PFAM_SSB_1s3oB02 (B:14-124)
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(
)
Clan
:
OB
(224)
Family
:
SSB
(18)
Homo sapiens (Human)
(2)
1a
SSB-1s3oB01
B:14-124
1b
SSB-1s3oB02
B:14-124
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