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1S16
Asym. Unit
Info
Asym.Unit (131 KB)
Biol.Unit 1 (65 KB)
Biol.Unit 2 (65 KB)
Biol.Unit 3 (126 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF E. COLI TOPOISOMERASE IV PARE 43KDA SUBUNIT COMPLEXED WITH ADPNP
Authors
:
Y. Wei, C. H. Gross
Date
:
05 Jan 04 (Deposition) - 04 May 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Two-Domain Protein Complexed With Adpnp, Isomerase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. Bellon, J. D. Parsons, Y. Wei, K. Hayakawa, L. L. Swenson, P. S. Charifson, J. A. Lippke, R. Aldape, C. H. Gross
Crystal Structures Of Escherichia Coli Topoisomerase Iv Par Subunit (24 And 43 Kilodaltons): A Single Residue Dictates Differences In Novobiocin Potency Against Topoisomerase Iv And Dna Gyrase.
Antimicrob. Agents Chemother. V. 48 1856 2004
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPa)
1b: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
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Label:
No.
Name
Count
Type
Full Name
1
ANP
2
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2
MG
2
Ligand/Ion
MAGNESIUM ION
3
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:1090 , ARG A:1093 , ALA A:1096 , GLY A:1113 , SER A:1117 , ANP A:1500
BINDING SITE FOR RESIDUE MG A 1501
2
AC2
SOFTWARE
ILE B:2090 , ARG B:2093 , ALA B:2096 , GLY B:2113 , SER B:2117 , ANP B:2500
BINDING SITE FOR RESIDUE MG B 2501
3
AC3
SOFTWARE
ARG A:1178 , SER A:1180 , VAL A:1181 , SER A:1182 , HOH A:3186
BINDING SITE FOR RESIDUE SO4 A 1502
4
AC4
SOFTWARE
ARG B:2178 , SER B:2180 , VAL B:2181 , SER B:2182 , HOH B:3243
BINDING SITE FOR RESIDUE SO4 B 2502
5
AC5
SOFTWARE
GLU A:1038 , ASN A:1042 , GLU A:1046 , ASP A:1069 , MET A:1074 , ILE A:1090 , ALA A:1096 , GLY A:1097 , GLY A:1098 , LYS A:1099 , TYR A:1105 , GLY A:1110 , LEU A:1111 , HIS A:1112 , GLY A:1113 , VAL A:1114 , GLY A:1115 , ILE A:1116 , THR A:1163 , GLN A:1332 , LYS A:1334 , MG A:1501 , HOH A:3001 , HOH A:3003 , HOH A:3042 , HOH A:3073 , HOH A:3079 , HOH A:3081 , TYR B:2005 , ILE B:2010
BINDING SITE FOR RESIDUE ANP A 1500
6
AC6
SOFTWARE
TYR A:1005 , GLU B:2038 , ASN B:2042 , GLU B:2046 , ASP B:2069 , MET B:2074 , ILE B:2090 , ALA B:2096 , GLY B:2097 , GLY B:2098 , LYS B:2099 , TYR B:2105 , GLY B:2110 , LEU B:2111 , HIS B:2112 , GLY B:2113 , VAL B:2114 , GLY B:2115 , ILE B:2116 , GLN B:2332 , LYS B:2334 , MG B:2501 , HOH B:3002 , HOH B:3008 , HOH B:3030 , HOH B:3072 , HOH B:3093 , HOH B:3183
BINDING SITE FOR RESIDUE ANP B 2500
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1s16a2 (A:1004-1216)
1b: SCOP_d1s16b2 (B:2004-2216)
2a: SCOP_d1s16a1 (A:1217-1383)
2b: SCOP_d1s16b1 (B:2217-2383)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
(364)
Superfamily
:
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
(364)
Family
:
DNA gyrase/MutL, N-terminal domain
(28)
Protein domain
:
Topoisomerase IV subunit B
(2)
Escherichia coli [TaxId: 562]
(2)
1a
d1s16a2
A:1004-1216
1b
d1s16b2
B:2004-2216
Fold
:
Ribosomal protein S5 domain 2-like
(306)
Superfamily
:
Ribosomal protein S5 domain 2-like
(306)
Family
:
DNA gyrase/MutL, second domain
(21)
Protein domain
:
Topoisomerase IV subunit B
(1)
Escherichia coli [TaxId: 562]
(1)
2a
d1s16a1
A:1217-1383
2b
d1s16b1
B:2217-2383
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1s16A01 (A:1004-1215)
1b: CATH_1s16B01 (B:2004-2215)
2a: CATH_1s16A02 (A:1216-1383)
2b: CATH_1s16B02 (B:2216-2383)
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Heat Shock Protein 90
(209)
Homologous Superfamily
:
[code=3.30.565.10, no name defined]
(205)
Escherichia coli. Organism_taxid: 562.
(9)
1a
1s16A01
A:1004-1215
1b
1s16B01
B:2004-2215
Topology
:
Ribosomal Protein S5; domain 2
(189)
Homologous Superfamily
:
[code=3.30.230.10, no name defined]
(170)
Escherichia coli. Organism_taxid: 562.
(1)
2a
1s16A02
A:1216-1383
2b
1s16B02
B:2216-2383
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (131 KB)
Header - Asym.Unit
Biol.Unit 1 (65 KB)
Header - Biol.Unit 1
Biol.Unit 2 (65 KB)
Header - Biol.Unit 2
Biol.Unit 3 (126 KB)
Header - Biol.Unit 3
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