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1S07
Asym. Unit
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Asym.Unit (146 KB)
Biol.Unit 1 (140 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE R253A MUTANT OF 7,8-DIAMINOPELARGONIC ACID SYNTHASE
Authors
:
J. Sandmark, A. C. Eliot, K. Famm, G. Schneider, J. F. Kirsch
Date
:
30 Dec 03 (Deposition) - 23 Mar 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.42
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Aminotransferase, Fold Type I, Subclass Ii, Homodimer, Transferase
(Keyword Search:
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Reference
:
J. Sandmark, A. C. Eliot, K. Famm, G. Schneider, J. F. Kirsch
Conserved And Nonconserved Residues In The Substrate Bindin Site Of 7, 8-Diaminopelargonic Acid Synthase From Escherichi Coli Are Essential For Catalysis.
Biochemistry V. 43 1213 2004
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: ISOPROPYL ALCOHOL (IPAa)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
3a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
3b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
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No.
Name
Count
Type
Full Name
1
IPA
1
Ligand/Ion
ISOPROPYL ALCOHOL
2
NA
2
Ligand/Ion
SODIUM ION
3
PLP
2
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
VAL A:96 , THR A:99 , PRO A:100 , LEU A:103 , HOH A:595
BINDING SITE FOR RESIDUE NA A 501
2
AC2
SOFTWARE
VAL B:96 , THR B:99 , PRO B:100 , LEU B:103 , HOH B:685
BINDING SITE FOR RESIDUE NA B 502
3
AC3
SOFTWARE
SER A:113 , TYR A:144 , HIS A:145 , GLU A:211 , ASP A:245 , ALA A:248 , LYS A:274 , HOH A:512 , HOH A:546 , HOH A:566 , HOH A:584 , PRO B:308 , THR B:309 , IPA B:600
BINDING SITE FOR RESIDUE PLP A 430
4
AC4
SOFTWARE
PRO A:308 , THR A:309 , GLY B:112 , SER B:113 , TYR B:144 , HIS B:145 , GLU B:211 , ASP B:245 , ILE B:247 , ALA B:248 , LYS B:274 , HOH B:643 , HOH B:662 , HOH B:665 , HOH B:676
BINDING SITE FOR RESIDUE PLP B 431
5
AC5
SOFTWARE
TYR A:17 , PLP A:430 , GLY B:307 , THR B:309 , HOH B:708
BINDING SITE FOR RESIDUE IPA B 600
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: AA_TRANSFER_CLASS_3 (A:242-279,B:242-279)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AA_TRANSFER_CLASS_3
PS00600
Aminotransferases class-III pyridoxal-phosphate attachment site.
BIOA_ECOLI
242-279
2
A:242-279
B:242-279
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1s07a_ (A:)
1b: SCOP_d1s07b_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
GABA-aminotransferase-like
(167)
Protein domain
:
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
(13)
Escherichia coli [TaxId: 562]
(11)
1a
d1s07a_
A:
1b
d1s07b_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1s07A02 (A:61-330)
1b: CATH_1s07B02 (B:61-330)
2a: CATH_1s07B01 (B:1-60,B:331-428)
2b: CATH_1s07A01 (A:1-60,A:331-429)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aspartate Aminotransferase; domain 2
(384)
Homologous Superfamily
:
Type I PLP-dependent aspartate aminotransferase-like (Major domain)
(384)
Escherichia coli. Organism_taxid: 562.
(37)
1a
1s07A02
A:61-330
1b
1s07B02
B:61-330
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Aspartate Aminotransferase, domain 1
(355)
Homologous Superfamily
:
Aspartate Aminotransferase, domain 1
(354)
Escherichia coli. Organism_taxid: 562.
(32)
2a
1s07B01
B:1-60,B:331-428
2b
1s07A01
A:1-60,A:331-429
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Aminotran_3_1s07B01 (B:28-372)
1b: PFAM_Aminotran_3_1s07B02 (B:28-372)
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Clan
:
PLP_aminotran
(240)
Family
:
Aminotran_3
(44)
Escherichia coli (strain K12)
(13)
1a
Aminotran_3-1s07B01
B:28-372
1b
Aminotran_3-1s07B02
B:28-372
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Asymmetric Unit 1
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