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1RZ8
Asym. Unit
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Asym.Unit (152 KB)
Biol.Unit 1 (75 KB)
Biol.Unit 2 (76 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN ANTI-HIV-1 GP120-REACTIVE ANTIBODY 17B
Authors
:
C. C. Huang, M. Venturi, S. Majeed, M. J. Moore, S. Phogat, M. -Y. Zhang, D. S. Dimitrov, W. A. Hendrickson, J. Robinson, J. Sodroski, R. Wyatt, M. Farzan, P. D. Kwong
Date
:
24 Dec 03 (Deposition) - 03 Feb 04 (Release) - 30 Nov 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Hiv-1; Gp120; Cd4I; Antibodies; Tyrosine Sulfation; Vh-Gene Usage, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. C. Huang, M. Venturi, S. Majeed, M. J. Moore, S. Phogat, M. -Y. Zhang, D. S. Dimitrov, W. A. Hendrickson, J. Robinson, J. Sodroski, R. Wyatt, H. Choe, M. Farzan, P. D. Kwong
Structural Basis Of Tyrosine Sulfation And Vh-Gene Usage In Antibodies That Recognize The Hiv Type 1 Coreceptor-Binding Site On Gp120
Proc. Natl. Acad. Sci. Usa V. 101 2706 2004
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Hetero Components
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Sites
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SAPs(SNPs)/Variants
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 8)
Info
All SCOP Domains
1a: SCOP_d1rz8b2 (B:114-213)
1b: SCOP_d1rz8d2 (D:114-213)
2a: SCOP_d1rz8a2 (A:110-212)
2b: SCOP_d1rz8c2 (C:110-212)
3a: SCOP_d1rz8b1 (B:1-113)
3b: SCOP_d1rz8d1 (D:1-113)
4a: SCOP_d1rz8a1 (A:1-109)
4b: SCOP_d1rz8c1 (C:1-109)
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Protein Domains
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(
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Organisms
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(
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Human (Homo sapiens) [TaxId: 9606]
(179)
1a
d1rz8b2
B:114-213
1b
d1rz8d2
D:114-213
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Human (Homo sapiens) [TaxId: 9606]
(144)
2a
d1rz8a2
A:110-212
2b
d1rz8c2
C:110-212
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Human (Homo sapiens), cluster 1 [TaxId: 9606]
(37)
3a
d1rz8b1
B:1-113
3b
d1rz8d1
D:1-113
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Human (Homo sapiens), cluster 3.2 [TaxId: 9606]
(31)
4a
d1rz8a1
A:1-109
4b
d1rz8c1
C:1-109
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1rz8A02 (A:109-211)
1b: CATH_1rz8A01 (A:1-108)
1c: CATH_1rz8C01 (C:1-108)
1d: CATH_1rz8B02 (B:114-213)
1e: CATH_1rz8D02 (D:114-213)
1f: CATH_1rz8B01 (B:1-113)
1g: CATH_1rz8D01 (D:1-113)
1h: CATH_1rz8C02 (C:109-211)
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1rz8A02
A:109-211
1b
1rz8A01
A:1-108
1c
1rz8C01
C:1-108
1d
1rz8B02
B:114-213
1e
1rz8D02
D:114-213
1f
1rz8B01
B:1-113
1g
1rz8D01
D:1-113
1h
1rz8C02
C:109-211
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (152 KB)
Header - Asym.Unit
Biol.Unit 1 (75 KB)
Header - Biol.Unit 1
Biol.Unit 2 (76 KB)
Header - Biol.Unit 2
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