PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1RZ0
Asym. Unit
Info
Asym.Unit (220 KB)
Biol.Unit 1 (57 KB)
Biol.Unit 2 (56 KB)
Biol.Unit 3 (57 KB)
Biol.Unit 4 (56 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
FLAVIN REDUCTASE PHEA2 IN NATIVE STATE
Authors
:
R. H. Van Den Heuvel, A. H. Westphal, A. J. Heck, M. A. Walsh, S. Rovida, W. J. Van Berkel, A. Mattevi
Date
:
23 Dec 03 (Deposition) - 06 Apr 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Flavin, Fad, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. H. Van Den Heuvel, A. H. Westphal, A. J. Heck, M. A. Walsh, S. Rovida, W. J. Van Berkel, A. Mattevi
Structural Studies On Flavin Reductase Phea2 Reveal Binding Of Nad In An Unusual Folded Conformation And Support Novel Mechanism Of Action.
J. Biol. Chem. V. 279 12860 2004
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 56)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
1c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
1d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
1e: FLAVIN-ADENINE DINUCLEOTIDE (FADe)
1f: FLAVIN-ADENINE DINUCLEOTIDE (FADf)
1g: FLAVIN-ADENINE DINUCLEOTIDE (FADg)
1h: FLAVIN-ADENINE DINUCLEOTIDE (FADh)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2ac: SELENOMETHIONINE (MSEac)
2ad: SELENOMETHIONINE (MSEad)
2ae: SELENOMETHIONINE (MSEae)
2af: SELENOMETHIONINE (MSEaf)
2ag: SELENOMETHIONINE (MSEag)
2ah: SELENOMETHIONINE (MSEah)
2ai: SELENOMETHIONINE (MSEai)
2aj: SELENOMETHIONINE (MSEaj)
2ak: SELENOMETHIONINE (MSEak)
2al: SELENOMETHIONINE (MSEal)
2am: SELENOMETHIONINE (MSEam)
2an: SELENOMETHIONINE (MSEan)
2ao: SELENOMETHIONINE (MSEao)
2ap: SELENOMETHIONINE (MSEap)
2aq: SELENOMETHIONINE (MSEaq)
2ar: SELENOMETHIONINE (MSEar)
2as: SELENOMETHIONINE (MSEas)
2at: SELENOMETHIONINE (MSEat)
2au: SELENOMETHIONINE (MSEau)
2av: SELENOMETHIONINE (MSEav)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FAD
8
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
MSE
48
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
VAL A:28 , GLY A:30 , MSE A:31 , THR A:32 , ALA A:33 , ASN A:34 , ALA A:35 , SER A:49 , GLY A:51 , ALA A:54 , LYS A:55 , MSE A:56 , ASN A:81 , PHE A:82 , ALA A:83 , GLY A:84 , GLN A:85 , PRO A:89 , VAL A:90 , HOH A:1217 , HOH A:1234
BINDING SITE FOR RESIDUE FAD A 1200
2
AC2
SOFTWARE
VAL B:28 , GLY B:30 , MSE B:31 , THR B:32 , ALA B:33 , ASN B:34 , ALA B:35 , SER B:49 , ILE B:50 , GLY B:51 , ALA B:54 , LYS B:55 , MSE B:56 , ASN B:81 , PHE B:82 , ALA B:83 , GLY B:84 , VAL B:90 , HOH B:2219 , HOH B:2235 , HOH B:2236
BINDING SITE FOR RESIDUE FAD B 2200
3
AC3
SOFTWARE
VAL C:28 , GLY C:30 , MSE C:31 , THR C:32 , ALA C:33 , ASN C:34 , ALA C:35 , SER C:49 , GLY C:51 , ALA C:54 , LYS C:55 , MSE C:56 , ASN C:81 , PHE C:82 , ALA C:83 , GLY C:84 , PRO C:89 , VAL C:90 , HOH C:3216 , HOH C:3218 , HOH C:3241
BINDING SITE FOR RESIDUE FAD C 3200
4
AC4
SOFTWARE
VAL D:28 , GLY D:30 , MSE D:31 , THR D:32 , ALA D:33 , ASN D:34 , ALA D:35 , SER D:49 , GLY D:51 , ALA D:54 , LYS D:55 , MSE D:56 , ASN D:81 , PHE D:82 , ALA D:83 , GLY D:84 , GLN D:85 , VAL D:90 , HOH D:4206 , HOH D:4223 , HOH D:4225
BINDING SITE FOR RESIDUE FAD D 4200
5
AC5
SOFTWARE
VAL E:28 , GLY E:30 , MSE E:31 , THR E:32 , ALA E:33 , ASN E:34 , ALA E:35 , SER E:49 , ILE E:50 , GLY E:51 , ALA E:54 , LYS E:55 , MSE E:56 , ASN E:81 , PHE E:82 , ALA E:83 , GLY E:84 , PRO E:89 , VAL E:90 , HOH E:5208 , HOH E:5225 , HOH E:5229 , HOH E:5232 , HOH E:5234 , HOH E:5250 , HOH E:5251
BINDING SITE FOR RESIDUE FAD E 5200
6
AC6
SOFTWARE
VAL F:28 , GLY F:30 , MSE F:31 , THR F:32 , ALA F:33 , ASN F:34 , ALA F:35 , SER F:49 , GLY F:51 , ALA F:54 , LYS F:55 , MSE F:56 , ASN F:81 , PHE F:82 , ALA F:83 , GLY F:84 , PRO F:89 , VAL F:90 , HOH F:6208 , HOH F:6219 , HOH F:6238 , HOH F:6239
BINDING SITE FOR RESIDUE FAD F 6200
7
AC7
SOFTWARE
VAL G:28 , GLY G:30 , MSE G:31 , THR G:32 , ALA G:33 , ASN G:34 , ALA G:35 , SER G:49 , GLY G:51 , ALA G:54 , LYS G:55 , MSE G:56 , ASN G:81 , PHE G:82 , ALA G:83 , GLY G:84 , PRO G:89 , VAL G:90 , HOH G:7217 , HOH G:7221 , HOH G:7224
BINDING SITE FOR RESIDUE FAD G 7200
8
AC8
SOFTWARE
VAL H:28 , GLY H:30 , MSE H:31 , THR H:32 , ALA H:33 , ASN H:34 , ALA H:35 , SER H:49 , ILE H:50 , GLY H:51 , ALA H:54 , LYS H:55 , MSE H:56 , ASN H:81 , PHE H:82 , ALA H:83 , GLY H:84 , GLN H:85 , VAL H:90 , HOH H:8228
BINDING SITE FOR RESIDUE FAD H 8200
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1rz0a_ (A:)
1b: SCOP_d1rz0c_ (C:)
1c: SCOP_d1rz0d_ (D:)
1d: SCOP_d1rz0e_ (E:)
1e: SCOP_d1rz0f_ (F:)
1f: SCOP_d1rz0g_ (G:)
1g: SCOP_d1rz0h_ (H:)
1h: SCOP_d1rz0b_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Split barrel-like
(99)
Superfamily
:
FMN-binding split barrel
(90)
Family
:
NADH:FMN oxidoreductase-like
(9)
Protein domain
:
Phenol 2-hydroxylase component B (PheA2)
(2)
Geobacillus thermoglucosidasius [TaxId: 1426]
(2)
1a
d1rz0a_
A:
1b
d1rz0c_
C:
1c
d1rz0d_
D:
1d
d1rz0e_
E:
1e
d1rz0f_
F:
1f
d1rz0g_
G:
1g
d1rz0h_
H:
1h
d1rz0b_
B:
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1rz0A00 (A:2-153)
1b: CATH_1rz0C00 (C:2-153)
1c: CATH_1rz0D00 (D:2-153)
1d: CATH_1rz0E00 (E:2-153)
1e: CATH_1rz0F00 (F:2-153)
1f: CATH_1rz0G00 (G:2-153)
1g: CATH_1rz0H00 (H:2-153)
1h: CATH_1rz0B00 (B:2-153)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Pnp Oxidase; Chain A
(68)
Homologous Superfamily
:
Electron Transport, Fmn-binding Protein; Chain A
(67)
Geobacillus thermoglucosidasius. Organism_taxid: 1426.
(2)
1a
1rz0A00
A:2-153
1b
1rz0C00
C:2-153
1c
1rz0D00
D:2-153
1d
1rz0E00
E:2-153
1e
1rz0F00
F:2-153
1f
1rz0G00
G:2-153
1g
1rz0H00
H:2-153
1h
1rz0B00
B:2-153
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (220 KB)
Header - Asym.Unit
Biol.Unit 1 (57 KB)
Header - Biol.Unit 1
Biol.Unit 2 (56 KB)
Header - Biol.Unit 2
Biol.Unit 3 (57 KB)
Header - Biol.Unit 3
Biol.Unit 4 (56 KB)
Header - Biol.Unit 4
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1RZ0
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help