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1RYY
Biol. Unit 1
Info
Asym.Unit (680 KB)
Biol.Unit 1 (343 KB)
Biol.Unit 2 (340 KB)
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(1)
Title
:
ACETOBACTER TURBIDANS ALPHA-AMINO ACID ESTER HYDROLASE Y206A MUTANT
Authors
:
T. R. M. Barends
Date
:
23 Dec 03 (Deposition) - 22 Feb 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Alpha/Beta Hydrolase Fold, Jellyroll Fold, Hydrolase
(Keyword Search:
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Reference
:
T. R. M. Barends, J. J. Polderman-Tijmes, P. A. Jekel, C. Williams, G. Wybenga, D. B. Janssen, B. W. Dijkstra
Acetobacter Turbidans {Alpha}-Amino Acid Ester Hydrolase: How A Single Mutation Improves An Antibiotic-Producing Enzyme.
J. Biol. Chem. V. 281 5804 2006
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Hetero Components
(0, 0)
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Sites
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d1ryya1 (A:435-666)
1b: SCOP_d1ryyb1 (B:435-666)
1c: SCOP_d1ryyc1 (C:435-666)
1d: SCOP_d1ryyd1 (D:435-666)
1e: SCOP_d1ryye1 (E:435-666)
1f: SCOP_d1ryyf1 (F:435-666)
1g: SCOP_d1ryyg1 (G:435-666)
1h: SCOP_d1ryyh1 (H:435-666)
2a: SCOP_d1ryya2 (A:50-434)
2b: SCOP_d1ryyb2 (B:50-434)
2c: SCOP_d1ryyc2 (C:50-434)
2d: SCOP_d1ryyd2 (D:50-434)
2e: SCOP_d1ryye2 (E:50-434)
2f: SCOP_d1ryyf2 (F:50-434)
2g: SCOP_d1ryyg2 (G:50-434)
2h: SCOP_d1ryyh2 (H:50-434)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
PepX C-terminal domain-like
(10)
Protein domain
:
Alpha-amino acid ester hydrolase
(5)
Acetobacter pasteurianus [TaxId: 438]
(4)
1a
d1ryya1
A:435-666
1b
d1ryyb1
B:435-666
1c
d1ryyc1
C:435-666
1d
d1ryyd1
D:435-666
1e
d1ryye1
E:435-666
1f
d1ryyf1
F:435-666
1g
d1ryyg1
G:435-666
1h
d1ryyh1
H:435-666
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
PepX catalytic domain-like
(19)
Protein domain
:
Alpha-amino acid ester hydrolase
(5)
Acetobacter pasteurianus [TaxId: 438]
(4)
2a
d1ryya2
A:50-434
2b
d1ryyb2
B:50-434
2c
d1ryyc2
C:50-434
2d
d1ryyd2
D:50-434
2e
d1ryye2
E:50-434
2f
d1ryyf2
F:50-434
2g
d1ryyg2
G:50-434
2h
d1ryyh2
H:50-434
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CATH Domains
(3, 24)
Info
all CATH domains
1a: CATH_1ryyA01 (A:50-238,A:316-432)
1b: CATH_1ryyB01 (B:50-238,B:316-432)
1c: CATH_1ryyC01 (C:50-238,C:316-432)
1d: CATH_1ryyD01 (D:50-238,D:316-432)
1e: CATH_1ryyE01 (E:50-238,E:316-432)
1f: CATH_1ryyF01 (F:50-238,F:316-432)
1g: CATH_1ryyG01 (G:50-238,G:316-432)
1h: CATH_1ryyH01 (H:50-238,H:316-432)
2a: CATH_1ryyA02 (A:240-315)
2b: CATH_1ryyB02 (B:240-315)
2c: CATH_1ryyC02 (C:240-315)
2d: CATH_1ryyD02 (D:240-315)
2e: CATH_1ryyE02 (E:240-315)
2f: CATH_1ryyF02 (F:240-315)
2g: CATH_1ryyG02 (G:240-315)
2h: CATH_1ryyH02 (H:240-315)
3a: CATH_1ryyA03 (A:433-666)
3b: CATH_1ryyB03 (B:433-666)
3c: CATH_1ryyC03 (C:433-666)
3d: CATH_1ryyD03 (D:433-666)
3e: CATH_1ryyE03 (E:433-666)
3f: CATH_1ryyF03 (F:433-666)
3g: CATH_1ryyG03 (G:433-666)
3h: CATH_1ryyH03 (H:433-666)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Acetobacter pasteurianus. Organism_taxid: 438.
(3)
1a
1ryyA01
A:50-238,A:316-432
1b
1ryyB01
B:50-238,B:316-432
1c
1ryyC01
C:50-238,C:316-432
1d
1ryyD01
D:50-238,D:316-432
1e
1ryyE01
E:50-238,E:316-432
1f
1ryyF01
F:50-238,F:316-432
1g
1ryyG01
G:50-238,G:316-432
1h
1ryyH01
H:50-238,H:316-432
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
alpha-amino acid ester hydrolase ( Helical cap domain)
(16)
Homologous Superfamily
:
alpha-amino acid ester hydrolase ( Helical cap domain)
(16)
Acetobacter pasteurianus. Organism_taxid: 438.
(3)
2a
1ryyA02
A:240-315
2b
1ryyB02
B:240-315
2c
1ryyC02
C:240-315
2d
1ryyD02
D:240-315
2e
1ryyE02
E:240-315
2f
1ryyF02
F:240-315
2g
1ryyG02
G:240-315
2h
1ryyH02
H:240-315
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Galactose-binding domain-like
(195)
Acetobacter pasteurianus. Organism_taxid: 438.
(3)
3a
1ryyA03
A:433-666
3b
1ryyB03
B:433-666
3c
1ryyC03
C:433-666
3d
1ryyD03
D:433-666
3e
1ryyE03
E:433-666
3f
1ryyF03
F:433-666
3g
1ryyG03
G:433-666
3h
1ryyH03
H:433-666
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Pfam Domains
(2, 16)
Info
all PFAM domains
1a: PFAM_Peptidase_S15_1ryyH01 (H:86-372)
1b: PFAM_Peptidase_S15_1ryyH02 (H:86-372)
1c: PFAM_Peptidase_S15_1ryyH03 (H:86-372)
1d: PFAM_Peptidase_S15_1ryyH04 (H:86-372)
1e: PFAM_Peptidase_S15_1ryyH05 (H:86-372)
1f: PFAM_Peptidase_S15_1ryyH06 (H:86-372)
1g: PFAM_Peptidase_S15_1ryyH07 (H:86-372)
1h: PFAM_Peptidase_S15_1ryyH08 (H:86-372)
2a: PFAM_PepX_C_1ryyH09 (H:411-661)
2b: PFAM_PepX_C_1ryyH10 (H:411-661)
2c: PFAM_PepX_C_1ryyH11 (H:411-661)
2d: PFAM_PepX_C_1ryyH12 (H:411-661)
2e: PFAM_PepX_C_1ryyH13 (H:411-661)
2f: PFAM_PepX_C_1ryyH14 (H:411-661)
2g: PFAM_PepX_C_1ryyH15 (H:411-661)
2h: PFAM_PepX_C_1ryyH16 (H:411-661)
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Clans
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Organisms
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)
Clan
:
AB_hydrolase
(347)
Family
:
Peptidase_S15
(7)
Acetobacter pasteurianus (Acetobacter turbidans)
(1)
1a
Peptidase_S15-1ryyH01
H:86-372
1b
Peptidase_S15-1ryyH02
H:86-372
1c
Peptidase_S15-1ryyH03
H:86-372
1d
Peptidase_S15-1ryyH04
H:86-372
1e
Peptidase_S15-1ryyH05
H:86-372
1f
Peptidase_S15-1ryyH06
H:86-372
1g
Peptidase_S15-1ryyH07
H:86-372
1h
Peptidase_S15-1ryyH08
H:86-372
Clan
:
GBD
(153)
Family
:
PepX_C
(7)
Acetobacter pasteurianus (Acetobacter turbidans)
(1)
2a
PepX_C-1ryyH09
H:411-661
2b
PepX_C-1ryyH10
H:411-661
2c
PepX_C-1ryyH11
H:411-661
2d
PepX_C-1ryyH12
H:411-661
2e
PepX_C-1ryyH13
H:411-661
2f
PepX_C-1ryyH14
H:411-661
2g
PepX_C-1ryyH15
H:411-661
2h
PepX_C-1ryyH16
H:411-661
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