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1RYW
Biol. Unit 2
Info
Asym.Unit (563 KB)
Biol.Unit 1 (286 KB)
Biol.Unit 2 (279 KB)
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(1)
Title
:
C115S MURA LIGANDED WITH REACTION PRODUCTS
Authors
:
S. Eschenburg, E. Schonbrunn
Date
:
22 Dec 03 (Deposition) - 09 Nov 04 (Release) - 27 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Inside-Out Alpha-Beta Barrel, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Eschenburg, M. Priestman, E. Schonbrunn
Evidence That The Fosfomycin Target Cys115 In Udp-N-Acetylglucosamine Enolpyruvyl Transferase (Mura) Is Essential For Product Release.
J. Biol. Chem. V. 280 3757 2005
[
close entry info
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Hetero Components
(4, 19)
Info
All Hetero Components
1a: URIDINE-DIPHOSPHATE-2(N-ACETYLGLUC... (EPUa)
1b: URIDINE-DIPHOSPHATE-2(N-ACETYLGLUC... (EPUb)
1c: URIDINE-DIPHOSPHATE-2(N-ACETYLGLUC... (EPUc)
1d: URIDINE-DIPHOSPHATE-2(N-ACETYLGLUC... (EPUd)
1e: URIDINE-DIPHOSPHATE-2(N-ACETYLGLUC... (EPUe)
1f: URIDINE-DIPHOSPHATE-2(N-ACETYLGLUC... (EPUf)
1g: URIDINE-DIPHOSPHATE-2(N-ACETYLGLUC... (EPUg)
1h: URIDINE-DIPHOSPHATE-2(N-ACETYLGLUC... (EPUh)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
2o: GLYCEROL (GOLo)
2p: GLYCEROL (GOLp)
2q: GLYCEROL (GOLq)
3a: BETA-L-ASPARTIC ACID (IASa)
3b: BETA-L-ASPARTIC ACID (IASb)
3c: BETA-L-ASPARTIC ACID (IASc)
3d: BETA-L-ASPARTIC ACID (IASd)
3e: BETA-L-ASPARTIC ACID (IASe)
3f: BETA-L-ASPARTIC ACID (IASf)
3g: BETA-L-ASPARTIC ACID (IASg)
3h: BETA-L-ASPARTIC ACID (IASh)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
4c: PHOSPHATE ION (PO4c)
4d: PHOSPHATE ION (PO4d)
4e: PHOSPHATE ION (PO4e)
4f: PHOSPHATE ION (PO4f)
4g: PHOSPHATE ION (PO4g)
4h: PHOSPHATE ION (PO4h)
4i: PHOSPHATE ION (PO4i)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EPU
4
Ligand/Ion
URIDINE-DIPHOSPHATE-2(N-ACETYLGLUCOSAMINYL) BUTYRICACID
2
GOL
6
Ligand/Ion
GLYCEROL
3
IAS
4
Mod. Amino Acid
BETA-L-ASPARTIC ACID
4
PO4
5
Ligand/Ion
PHOSPHATE ION
[
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Sites
(15, 15)
Info
All Sites
01: AC5 (SOFTWARE)
02: AC6 (SOFTWARE)
03: AC7 (SOFTWARE)
04: AC8 (SOFTWARE)
05: AC9 (SOFTWARE)
06: BC1 (SOFTWARE)
07: BC6 (SOFTWARE)
08: BC7 (SOFTWARE)
09: BC8 (SOFTWARE)
10: DC2 (SOFTWARE)
11: DC3 (SOFTWARE)
12: DC4 (SOFTWARE)
13: DC5 (SOFTWARE)
14: DC6 (SOFTWARE)
15: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC5
SOFTWARE
LYS E:22 , ARG E:120 , ARG E:397 , HOH E:583 , HOH E:752 , EPU E:6450 , GOL E:6471
BINDING SITE FOR RESIDUE PO4 E 6461
02
AC6
SOFTWARE
LYS F:22 , ARG F:120 , HOH F:424 , EPU F:7450 , GOL F:7471
BINDING SITE FOR RESIDUE PO4 F 7461
03
AC7
SOFTWARE
LYS G:22 , ARG G:120 , ARG G:397 , HOH G:436 , HOH G:1037 , EPU G:8450 , GOL G:8471
BINDING SITE FOR RESIDUE PO4 G 8461
04
AC8
SOFTWARE
GLY G:114 , SER G:115 , ALA G:116 , HOH G:438 , MET H:366
BINDING SITE FOR RESIDUE PO4 G 8462
05
AC9
SOFTWARE
LYS H:22 , ARG H:120 , ARG H:397 , HOH H:567 , EPU H:9450 , GOL H:9471
BINDING SITE FOR RESIDUE PO4 H 9461
06
BC1
SOFTWARE
LYS E:22 , ASN E:23 , TRP E:95 , ARG E:120 , PRO E:121 , VAL E:122 , ASP E:123 , LEU E:124 , HIS E:125 , LYS E:160 , SER E:162 , VAL E:163 , GLY E:164 , THR E:304 , ASP E:305 , ILE E:327 , PHE E:328 , ARG E:331 , ARG E:371 , HOH E:424 , HOH E:425 , HOH E:431 , HOH E:433 , HOH E:436 , HOH E:438 , HOH E:465 , HOH E:596 , HOH E:756 , HOH E:798 , PO4 E:6461 , GOL E:6471
BINDING SITE FOR RESIDUE EPU E 6450
07
BC6
SOFTWARE
LYS F:22 , ASN F:23 , TRP F:95 , ARG F:120 , PRO F:121 , VAL F:122 , ASP F:123 , LEU F:124 , HIS F:125 , LYS F:160 , SER F:162 , VAL F:163 , GLY F:164 , THR F:304 , ASP F:305 , ILE F:327 , PHE F:328 , ARG F:331 , ARG F:371 , HOH F:420 , HOH F:427 , HOH F:429 , HOH F:447 , HOH F:465 , HOH F:580 , HOH F:912 , HOH F:1101 , HOH F:1171 , PO4 F:7461 , GOL F:7471
BINDING SITE FOR RESIDUE EPU F 7450
08
BC7
SOFTWARE
LYS G:22 , ASN G:23 , TRP G:95 , ARG G:120 , PRO G:121 , VAL G:122 , ASP G:123 , LEU G:124 , HIS G:125 , LYS G:160 , SER G:162 , VAL G:163 , GLY G:164 , THR G:304 , ASP G:305 , ILE G:327 , PHE G:328 , ARG G:331 , ARG G:371 , HOH G:420 , HOH G:425 , HOH G:426 , HOH G:462 , HOH G:476 , HOH G:481 , HOH G:485 , HOH G:492 , HOH G:532 , HOH G:1354 , PO4 G:8461 , GOL G:8471
BINDING SITE FOR RESIDUE EPU G 8450
09
BC8
SOFTWARE
LYS H:22 , ASN H:23 , TRP H:95 , ARG H:120 , PRO H:121 , VAL H:122 , ASP H:123 , LEU H:124 , HIS H:125 , LYS H:160 , SER H:162 , VAL H:163 , GLY H:164 , THR H:304 , ASP H:305 , ILE H:327 , PHE H:328 , ARG H:331 , ARG H:371 , HOH H:434 , HOH H:440 , HOH H:443 , HOH H:446 , HOH H:447 , HOH H:461 , HOH H:467 , HOH H:472 , HOH H:509 , HOH H:934 , PO4 H:9461 , GOL H:9471
BINDING SITE FOR RESIDUE EPU H 9450
10
DC2
SOFTWARE
ARG E:91 , ALA E:92 , ILE E:94 , TRP E:95 , HIS E:125 , GLY E:164 , HOH E:425 , EPU E:6450 , PO4 E:6461
BINDING SITE FOR RESIDUE GOL E 6471
11
DC3
SOFTWARE
ARG F:91 , ALA F:92 , ILE F:94 , TRP F:95 , ARG F:120 , HIS F:125 , GLY F:164 , HOH F:447 , EPU F:7450 , PO4 F:7461
BINDING SITE FOR RESIDUE GOL F 7471
12
DC4
SOFTWARE
ARG G:91 , ALA G:92 , TRP G:95 , HIS G:125 , GLY G:164 , HOH G:420 , EPU G:8450 , PO4 G:8461
BINDING SITE FOR RESIDUE GOL G 8471
13
DC5
SOFTWARE
ARG E:252
BINDING SITE FOR RESIDUE GOL E 8472
14
DC6
SOFTWARE
ARG H:91 , ILE H:94 , TRP H:95 , ARG H:120 , HIS H:125 , GLY H:164 , EPU H:9450 , PO4 H:9461
BINDING SITE FOR RESIDUE GOL H 9471
15
DC7
SOFTWARE
VAL H:250 , ARG H:252 , TRP H:279
BINDING SITE FOR RESIDUE GOL H 9472
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1rywa_ (A:)
1b: SCOP_d1rywb_ (B:)
1c: SCOP_d1rywc_ (C:)
1d: SCOP_d1rywd_ (D:)
1e: SCOP_d1rywe_ (E:)
1f: SCOP_d1rywf_ (F:)
1g: SCOP_d1rywg_ (G:)
1h: SCOP_d1rywh_ (H:)
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)
(
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)
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)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
IF3-like
(127)
Superfamily
:
EPT/RTPC-like
(82)
Family
:
Enolpyruvate transferase, EPT
(68)
Protein domain
:
UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ)
(27)
Enterobacter cloacae [TaxId: 550]
(12)
1a
d1rywa_
A:
1b
d1rywb_
B:
1c
d1rywc_
C:
1d
d1rywd_
D:
1e
d1rywe_
E:
1f
d1rywf_
F:
1g
d1rywg_
G:
1h
d1rywh_
H:
[
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]
CATH Domains
(1, 16)
Info
all CATH domains
1a: CATH_1rywA01 (A:1-18,A:230-418)
1b: CATH_1rywG01 (G:1-18,G:230-418)
1c: CATH_1rywH01 (H:1-18,H:230-418)
1d: CATH_1rywB01 (B:1-18,B:230-418)
1e: CATH_1rywA02 (A:21-228)
1f: CATH_1rywB02 (B:21-228)
1g: CATH_1rywC02 (C:21-228)
1h: CATH_1rywD02 (D:21-228)
1i: CATH_1rywE02 (E:21-228)
1j: CATH_1rywF02 (F:21-228)
1k: CATH_1rywG02 (G:21-228)
1l: CATH_1rywH02 (H:21-228)
1m: CATH_1rywC01 (C:1-18,C:230-418)
1n: CATH_1rywD01 (D:1-18,D:230-418)
1o: CATH_1rywE01 (E:1-18,E:230-418)
1p: CATH_1rywF01 (F:1-18,F:230-418)
View:
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)
(
)
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-beta prism
(50)
Topology
:
UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain
(50)
Homologous Superfamily
:
[code=3.65.10.10, no name defined]
(47)
Enterobacter cloacae. Organism_taxid: 550.
(4)
1a
1rywA01
A:1-18,A:230-418
1b
1rywG01
G:1-18,G:230-418
1c
1rywH01
H:1-18,H:230-418
1d
1rywB01
B:1-18,B:230-418
1e
1rywA02
A:21-228
1f
1rywB02
B:21-228
1g
1rywC02
C:21-228
1h
1rywD02
D:21-228
1i
1rywE02
E:21-228
1j
1rywF02
F:21-228
1k
1rywG02
G:21-228
1l
1rywH02
H:21-228
1m
1rywC01
C:1-18,C:230-418
1n
1rywD01
D:1-18,D:230-418
1o
1rywE01
E:1-18,E:230-418
1p
1rywF01
F:1-18,F:230-418
[
close CATH info
]
Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_EPSP_synthase_1rywH01 (H:6-406)
1b: PFAM_EPSP_synthase_1rywH02 (H:6-406)
1c: PFAM_EPSP_synthase_1rywH03 (H:6-406)
1d: PFAM_EPSP_synthase_1rywH04 (H:6-406)
1e: PFAM_EPSP_synthase_1rywH05 (H:6-406)
1f: PFAM_EPSP_synthase_1rywH06 (H:6-406)
1g: PFAM_EPSP_synthase_1rywH07 (H:6-406)
1h: PFAM_EPSP_synthase_1rywH08 (H:6-406)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
EPT_RTPC
(43)
Family
:
EPSP_synthase
(40)
Enterobacter cloacae subsp. cloacae (strain ATCC 13047 / DSM 30054 / NBRC 13535 / NCDC 279-56)
(6)
1a
EPSP_synthase-1rywH01
H:6-406
1b
EPSP_synthase-1rywH02
H:6-406
1c
EPSP_synthase-1rywH03
H:6-406
1d
EPSP_synthase-1rywH04
H:6-406
1e
EPSP_synthase-1rywH05
H:6-406
1f
EPSP_synthase-1rywH06
H:6-406
1g
EPSP_synthase-1rywH07
H:6-406
1h
EPSP_synthase-1rywH08
H:6-406
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