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Getting 'Biological Unit' information from database.
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1RYF
Asym. Unit
Info
Asym.Unit (67 KB)
Biol.Unit 1 (31 KB)
Biol.Unit 2 (32 KB)
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(1)
Title
:
ALTERNATIVE SPLICING OF RAC1 GENERATES RAC1B, A SELF-ACTIVATING GTPASE
Authors
:
M. R. Ahmadian, D. Fiegen
Date
:
22 Dec 03 (Deposition) - 27 Jan 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Gtp Binding, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Fiegen, L. C. Haeusler, L. Blumenstein, U. Herbrand, R. Dvorsky, I. R. Vetter, M. R. Ahmadian
Alternative Splicing Of Rac1 Generates Rac1B, A Self-Activating Gtpase
J. Biol. Chem. V. 279 4743 2004
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
1b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
2
MG
2
Ligand/Ion
MAGNESIUM ION
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:17 , GDP A:538 , HOH A:540 , HOH A:541 , HOH A:605 , HOH A:606
BINDING SITE FOR RESIDUE MG A 539
2
AC2
SOFTWARE
THR B:17 , GDP B:1538 , HOH B:1584 , HOH B:1585 , HOH B:1586 , HOH B:1587
BINDING SITE FOR RESIDUE MG B 1539
3
AC3
SOFTWARE
ALA A:13 , VAL A:14 , GLY A:15 , LYS A:16 , THR A:17 , CYS A:18 , PHE A:28 , LYS A:135 , ASP A:137 , LEU A:138 , SER A:177 , ALA A:178 , LEU A:179 , MG A:539 , HOH A:541 , HOH A:542 , HOH A:575 , HOH A:585 , HOH A:605 , HOH A:606 , HOH A:623 , HOH A:641 , HOH A:645
BINDING SITE FOR RESIDUE GDP A 538
4
AC4
SOFTWARE
ALA B:13 , VAL B:14 , GLY B:15 , LYS B:16 , THR B:17 , CYS B:18 , PHE B:28 , LYS B:135 , ASP B:137 , LEU B:138 , SER B:177 , ALA B:178 , LEU B:179 , MG B:1539 , HOH B:1558 , HOH B:1575 , HOH B:1586 , HOH B:1587 , HOH B:1598 , HOH B:1642 , HOH B:1663
BINDING SITE FOR RESIDUE GDP B 1538
[
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SAPs(SNPs)/Variants
(11, 20)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_014540 (N26D, chain A/B, )
02: VAR_014541 (F28L, chain A/B, )
03: VAR_014542 (A59T, chain A, )
04: VAR_014545 (V112G, chain A/B, )
05: VAR_014544 (V112I, chain A/B, )
06: VAR_014546 (T127I, chain A/B, )
07: VAR_014547 (K149R, chain A/B, )
08: VAR_014548 (K152E, chain A/B, )
09: VAR_033303 (T154I, chain A/B, )
10: VAR_014549 (P199S, chain A/B, )
11: VAR_014550 (V201E, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_014540
N
26
D
RAC1_HUMAN
Polymorphism
5830
A/B
N
26
D
02
UniProt
VAR_014541
F
28
L
RAC1_HUMAN
Polymorphism
5832
A/B
F
28
L
03
UniProt
VAR_014542
A
59
T
RAC1_HUMAN
Polymorphism
5837
A
A
59
T
04
UniProt
VAR_014545
V
93
G
RAC1_HUMAN
Polymorphism
5826
A/B
V
112
G
05
UniProt
VAR_014544
V
93
I
RAC1_HUMAN
Polymorphism
5825
A/B
V
112
I
06
UniProt
VAR_014546
T
108
I
RAC1_HUMAN
Polymorphism
5838
A/B
T
127
I
07
UniProt
VAR_014547
K
130
R
RAC1_HUMAN
Polymorphism
5828
A/B
K
149
R
08
UniProt
VAR_014548
K
133
E
RAC1_HUMAN
Polymorphism
5835
A/B
K
152
E
09
UniProt
VAR_033303
T
135
I
RAC1_HUMAN
Polymorphism
11540455
A/B
T
154
I
10
UniProt
VAR_014549
P
180
S
RAC1_HUMAN
Polymorphism
16063
A/B
P
199
S
11
UniProt
VAR_014550
V
182
E
RAC1_HUMAN
Polymorphism
5836
A
V
201
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RHO (A:1-195,B:1-195)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RHO
PS51420
small GTPase Rho family profile.
RAC1_HUMAN
1-176
2
A:1-195
B:1-195
[
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Exons
(6, 12)
Info
All Exons
Exon 1.1a (A:1-12 | B:1-12)
Exon 1.3 (A:12-36 | B:12-36)
Exon 1.5 (A:36-94 (gaps) | B:36-94 (gaps))
Exon 1.7b (A:95-115 | B:95-115)
Exon 1.8b (A:116-169 | B:116-169)
Exon 1.9f (A:169-201 | B:169-199)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.3
3: Boundary 1.3/1.5
4: Boundary 1.5/1.7b
5: Boundary 1.7b/1.8b
6: Boundary 1.8b/1.9f
7: Boundary 1.9f/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000348035
1a
ENSE00001876788
chr7:
6414154-6414401
248
RAC1_HUMAN
1-12
12
2
A:1-12
B:1-12
12
12
1.3
ENST00000348035
3
ENSE00001676753
chr7:
6426843-6426914
72
RAC1_HUMAN
12-36
25
2
A:12-36
B:12-36
25
25
1.5
ENST00000348035
5
ENSE00001643043
chr7:
6431555-6431672
118
RAC1_HUMAN
36-75
40
2
A:36-94 (gaps)
B:36-94 (gaps)
40
40
1.7b
ENST00000348035
7b
ENSE00000831659
chr7:
6439757-6439819
63
RAC1_HUMAN
76-96
21
2
A:95-115
B:95-115
21
21
1.8b
ENST00000348035
8b
ENSE00001637705
chr7:
6441499-6441658
160
RAC1_HUMAN
97-150
54
2
A:116-169
B:116-169
54
54
1.9f
ENST00000348035
9f
ENSE00001551063
chr7:
6441947-6443608
1662
RAC1_HUMAN
150-192
43
2
A:169-201
B:169-199
33
31
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1ryfa_ (A:)
1b: SCOP_d1ryfb_ (B:)
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(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Rac
(17)
Human (Homo sapiens) [TaxId: 9606]
(17)
1a
d1ryfa_
A:
1b
d1ryfb_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1ryfA00 (A:1A-201)
1b: CATH_1ryfB00 (B:1A-199)
View:
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)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
1ryfA00
A:1A-201
1b
1ryfB00
B:1A-199
[
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]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Ras_1ryfB01 (B:5-197)
1b: PFAM_Ras_1ryfB02 (B:5-197)
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Clans
(
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(
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Families
(
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(
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Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
Ras
(176)
Homo sapiens (Human)
(141)
1a
Ras-1ryfB01
B:5-197
1b
Ras-1ryfB02
B:5-197
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Asymmetric Unit 1
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