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1RY8
Biol. Unit 2
Info
Asym.Unit (123 KB)
Biol.Unit 1 (61 KB)
Biol.Unit 2 (61 KB)
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(1)
Title
:
PROSTAGLANDIN F SYNTHASE COMPLEXED WITH NADPH AND RUTIN
Authors
:
J. Komoto, T. Yamada, K. Watanabe, F. Takusagawa
Date
:
19 Dec 03 (Deposition) - 02 Nov 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.69
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Prostaglandin F Synthase, Akr1C3, Rutin, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Komoto, T. Yamada, K. Watanabe, F. Takusagawa
Crystal Structure Of Human Prostaglandin F Synthase (Akr1C3).
Biochemistry V. 43 2188 2004
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
1b: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPb)
2a: RUTIN (RUTa)
2b: RUTIN (RUTb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NDP
1
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
2
RUT
1
Ligand/Ion
RUTIN
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Sites
(2, 2)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
GLY B:22 , THR B:23 , TYR B:24 , ASP B:50 , TYR B:55 , HIS B:117 , SER B:166 , ASN B:167 , GLN B:190 , TYR B:216 , SER B:217 , ALA B:218 , LEU B:219 , GLY B:220 , SER B:221 , GLN B:222 , LEU B:236 , ALA B:253 , LEU B:268 , ALA B:269 , LYS B:270 , SER B:271 , TYR B:272 , ASN B:273 , ARG B:276 , GLN B:279 , ASN B:280 , HOH B:1015 , HOH B:1053 , HOH B:1070 , HOH B:1219 , HOH B:1232 , HOH B:1268 , HOH B:1459 , RUT B:3325
BINDING SITE FOR RESIDUE NDP B 3324
2
AC4
SOFTWARE
TYR B:24 , LEU B:54 , TYR B:55 , HIS B:117 , MET B:120 , SER B:129 , ASN B:167 , TYR B:216 , GLN B:222 , ASP B:224 , ARG B:226 , TRP B:227 , HIS B:304 , PHE B:306 , PHE B:311 , TYR B:319 , HOH B:1053 , HOH B:1109 , HOH B:1267 , NDP B:3324
BINDING SITE FOR RESIDUE RUT B 3325
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SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_013288 (Q5Q, chain B, )
2: VAR_032767 (R66Q, chain B, )
3: VAR_061001 (E77G, chain B, )
4: VAR_032768 (R170C, chain B, )
5: VAR_013289 (M175I, chain B, )
6: VAR_032769 (P180S, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_013288
H
5
Q
AK1C3_HUMAN
Polymorphism
12529
B
Q
5
Q
2
UniProt
VAR_032767
R
66
Q
AK1C3_HUMAN
Polymorphism
35961894
B
R
66
Q
3
UniProt
VAR_061001
E
77
G
AK1C3_HUMAN
Polymorphism
41306308
B
E
77
G
4
UniProt
VAR_032768
R
170
C
AK1C3_HUMAN
Polymorphism
35575889
B
R
170
C
5
UniProt
VAR_013289
M
175
I
AK1C3_HUMAN
Polymorphism
1131132
B
M
175
I
6
UniProt
VAR_032769
P
180
S
AK1C3_HUMAN
Polymorphism
34186955
B
P
180
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: ALDOKETO_REDUCTASE_1 (B:45-62)
2: ALDOKETO_REDUCTASE_2 (B:151-168)
3: ALDOKETO_REDUCTASE_3 (B:268-283)
;
View:
Select:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDOKETO_REDUCTASE_1
PS00798
Aldo/keto reductase family signature 1.
AK1C3_HUMAN
45-62
1
-
B:45-62
2
ALDOKETO_REDUCTASE_2
PS00062
Aldo/keto reductase family signature 2.
AK1C3_HUMAN
151-168
1
-
B:151-168
3
ALDOKETO_REDUCTASE_3
PS00063
Aldo/keto reductase family putative active site signature.
AK1C3_HUMAN
268-283
1
-
B:268-283
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1ry8a_ (A:)
1b: SCOP_d1ry8b_ (B:)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
NAD(P)-linked oxidoreductase
(286)
Family
:
Aldo-keto reductases (NADP)
(251)
Protein domain
:
Prostaglandin d2 11-ketoreductase (akr1c3)
(30)
Human (Homo sapiens) [TaxId: 9606]
(30)
1a
d1ry8a_
A:
1b
d1ry8b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1ry8A00 (A:5-323)
1b: CATH_1ry8B00 (B:5-323)
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
NADP-dependent oxidoreductase
(181)
Human (Homo sapiens)
(116)
1a
1ry8A00
A:5-323
1b
1ry8B00
B:5-323
[
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]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Aldo_ket_red_1ry8B01 (B:18-301)
1b: PFAM_Aldo_ket_red_1ry8B02 (B:18-301)
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)
Clan
:
no clan defined [family: Aldo_ket_red]
(94)
Family
:
Aldo_ket_red
(94)
Homo sapiens (Human)
(60)
1a
Aldo_ket_red-1ry8B01
B:18-301
1b
Aldo_ket_red-1ry8B02
B:18-301
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Chain B
Asymmetric Unit 1
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Asym.Unit (123 KB)
Header - Asym.Unit
Biol.Unit 1 (61 KB)
Header - Biol.Unit 1
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